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The map label for this gene is 94314536

Identifier: 94314536

GI number: 94314536

Start: 2373890

End: 2374951

Strand: Direct

Name: 94314536

Synonym: Rmet_5617

Alternate gene names: NA

Gene position: 2373890-2374951 (Clockwise)

Preceding gene: 94314530

Following gene: 291481594

Centisome position: 92.01

GC content: 65.16

Gene sequence:

>1062_bases
ATGCCAAATCCGAACCGGGCCTTTCTGCTCGGCCCGCTGCTGAAGGGGGTTTCCCGTTCGTTCTACCTGACGCTTCGCAT
CCTGCCCGAGGGCATGCGCGACCCCGTCGGCCTGGCCTATCTGCTGGCACGCGCCGCGGACACCATCGCGGATACCTCGC
TGATTCCACCCGTGCAACGACTAGACCTGCTGCTGGCGCTACGGCAGCACGTCAACGGCACCCAGAACGACGGTTCGCTC
GCGCAACGGCTGAGCGCGGAAGTTGCCAGCCAGCAAACCCAATCCGACGAGAAGGTACTGCTGGAATCGATCGGCCCCGC
GCTTGGCGTGCTGAGCCAGCTCGATGCATCTGATTGCACCGCCGTCCGCGGTATCGTCGATACGCTGACCGAAGGCATGG
AATTCGACCTGCGCACGTTCCCCGACGAGCGCTCGGGCCAGGTGGCCGCGCTGCGGACGATGGACGAGCTCGATCGCTAC
ACGTATCTCGTGGCCGGTTGTGTGGGGGAGTTCTGGACCACGATGACCTATGCCCACCAGCCGGGCACGCTGACGGCAGC
GCCCGAGACGATGCTGCGCCGAGGTGTCCGCTTCGGCAAGGCATTGCAGATGGTCAATGTGCTGCGTGATTGCGGTAAGG
ATCTGCGCATCGGCCGGTGCTATCTGCCGACCGAGATCCTGGAGCGACATGGCATGACGCCACGCGACCTGATGGACCCG
GCCAATGCGCTGCGCGCGCGGCCAATTCTGGACGAACTGCTGCATGTCTCGCTCGCGCATTTCCGCGAAGCGATGGCCTA
CACGTTCGCGATTCCACGCACGGCAATCCGGCTGCGGCTGGCCTGCCTGTGGCCGATCCTGATTGGCCTGGAGACGCTGC
TGCTATTGGCCGGCAACAAGGCCTGGCCCGACCCCGCGCACGTCTCGAAGATCCCGCGCGGCAAGGTGTACCGGGTGCTT
GTGCGCAGCACGGCAACGGTCATGTCGGACACGCTGCTGCGGCGCTGGATGGAAGACCTGATCGCGCAGATCGAGGCCAG
CCTCGACGGTTCCACCCGATAG

Upstream 100 bases:

>100_bases
GGTTTAATACGCGCAAGCTTGGCAGGGCCAAGTTGAGGCCAGACGAGTTCGTCAGCTTTGGCGGATACAATGCGCCGTCC
CATCGTGCGATCACCATGCC

Downstream 100 bases:

>100_bases
ACGTTGCTTCGTCGGCAGCTTCAGCCCGGGACATCGCCGATTGCAAAGGCGAGGTTTCGCGTCACGCGATCGTGCTGCTC
GCGCGGCAGGCGCGGATCGG

Product: Squalene/phytoene synthase

Products: NA

Alternate protein names: Farnesyl-Diphosphate Farnesyltransferase; Squalene Synthase; Squalene/Phytoene Synthase Family Protein; Squalene And Phytoene Synthase; Squalene Synthetase; Phytoene/Squalene Synthetase Family Protein; Phytoene/Squalene Synthetase; SQS PSY Squalene/Phytoene Synthase-Like Protein

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MPNPNRAFLLGPLLKGVSRSFYLTLRILPEGMRDPVGLAYLLARAADTIADTSLIPPVQRLDLLLALRQHVNGTQNDGSL
AQRLSAEVASQQTQSDEKVLLESIGPALGVLSQLDASDCTAVRGIVDTLTEGMEFDLRTFPDERSGQVAALRTMDELDRY
TYLVAGCVGEFWTTMTYAHQPGTLTAAPETMLRRGVRFGKALQMVNVLRDCGKDLRIGRCYLPTEILERHGMTPRDLMDP
ANALRARPILDELLHVSLAHFREAMAYTFAIPRTAIRLRLACLWPILIGLETLLLLAGNKAWPDPAHVSKIPRGKVYRVL
VRSTATVMSDTLLRRWMEDLIAQIEASLDGSTR

Sequences:

>Translated_353_residues
MPNPNRAFLLGPLLKGVSRSFYLTLRILPEGMRDPVGLAYLLARAADTIADTSLIPPVQRLDLLLALRQHVNGTQNDGSL
AQRLSAEVASQQTQSDEKVLLESIGPALGVLSQLDASDCTAVRGIVDTLTEGMEFDLRTFPDERSGQVAALRTMDELDRY
TYLVAGCVGEFWTTMTYAHQPGTLTAAPETMLRRGVRFGKALQMVNVLRDCGKDLRIGRCYLPTEILERHGMTPRDLMDP
ANALRARPILDELLHVSLAHFREAMAYTFAIPRTAIRLRLACLWPILIGLETLLLLAGNKAWPDPAHVSKIPRGKVYRVL
VRSTATVMSDTLLRRWMEDLIAQIEASLDGSTR
>Mature_352_residues
PNPNRAFLLGPLLKGVSRSFYLTLRILPEGMRDPVGLAYLLARAADTIADTSLIPPVQRLDLLLALRQHVNGTQNDGSLA
QRLSAEVASQQTQSDEKVLLESIGPALGVLSQLDASDCTAVRGIVDTLTEGMEFDLRTFPDERSGQVAALRTMDELDRYT
YLVAGCVGEFWTTMTYAHQPGTLTAAPETMLRRGVRFGKALQMVNVLRDCGKDLRIGRCYLPTEILERHGMTPRDLMDPA
NALRARPILDELLHVSLAHFREAMAYTFAIPRTAIRLRLACLWPILIGLETLLLLAGNKAWPDPAHVSKIPRGKVYRVLV
RSTATVMSDTLLRRWMEDLIAQIEASLDGSTR

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6321984, Length=291, Percent_Identity=25.4295532646048, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39128; Mature: 38997

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNPNRAFLLGPLLKGVSRSFYLTLRILPEGMRDPVGLAYLLARAADTIADTSLIPPVQR
CCCCCCEEEHHHHHHHCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
LDLLLALRQHVNGTQNDGSLAQRLSAEVASQQTQSDEKVLLESIGPALGVLSQLDASDCT
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCCCHHHH
AVRGIVDTLTEGMEFDLRTFPDERSGQVAALRTMDELDRYTYLVAGCVGEFWTTMTYAHQ
HHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PGTLTAAPETMLRRGVRFGKALQMVNVLRDCGKDLRIGRCYLPTEILERHGMTPRDLMDP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCHHHHCH
ANALRARPILDELLHVSLAHFREAMAYTFAIPRTAIRLRLACLWPILIGLETLLLLAGNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AWPDPAHVSKIPRGKVYRVLVRSTATVMSDTLLRRWMEDLIAQIEASLDGSTR
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PNPNRAFLLGPLLKGVSRSFYLTLRILPEGMRDPVGLAYLLARAADTIADTSLIPPVQR
CCCCCEEEHHHHHHHCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
LDLLLALRQHVNGTQNDGSLAQRLSAEVASQQTQSDEKVLLESIGPALGVLSQLDASDCT
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCCCHHHH
AVRGIVDTLTEGMEFDLRTFPDERSGQVAALRTMDELDRYTYLVAGCVGEFWTTMTYAHQ
HHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PGTLTAAPETMLRRGVRFGKALQMVNVLRDCGKDLRIGRCYLPTEILERHGMTPRDLMDP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCHHHHCH
ANALRARPILDELLHVSLAHFREAMAYTFAIPRTAIRLRLACLWPILIGLETLLLLAGNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AWPDPAHVSKIPRGKVYRVLVRSTATVMSDTLLRRWMEDLIAQIEASLDGSTR
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA