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The map label for this gene is cyoD [H]

Identifier: 94314530

GI number: 94314530

Start: 2367704

End: 2368132

Strand: Direct

Name: cyoD [H]

Synonym: Rmet_5611

Alternate gene names: 94314530

Gene position: 2367704-2368132 (Clockwise)

Preceding gene: 94314529

Following gene: 94314536

Centisome position: 91.77

GC content: 60.61

Gene sequence:

>429_bases
ATGAGCGCGCAAGACCACGCGATGGACGGCCACGGGCATGGCCATGAGCACGAAGAGGAAGTGGGGCCGCACGCCACGCT
GGGTGGCTATCTGACGGGCTTCGTGCTGTCGGTGTTCCTGACAGCGGTGCCGTTCTGGCTGGTGATGGGCAAGGTGTTCG
AAAAGTCGTCCACCACCGCCATCGCCATCCTGCTGATCGGCGCGGTGCAAATCGTGGTGCACATGATCTACTTCCTGCAC
ATGAACGCCAAGTCGGAAGGCGGCTGGAACATGCTTTCCCTGATGTTCACGCTGACACTGGTCGTGATCACGCTGACCGG
ATCGCTATGGGTGATGTTCCACCTGAACAGCAACATGATGCCGCAGATGCGGCACACGCAGCAGGCGGCGGAATCGGGTG
GCACGATCGTGCCACCCAGAACCAAATAG

Upstream 100 bases:

>100_bases
CGAACAAGCGCAGGCTGATGTGCCTGTCGATGTTCTGGCACTTTCTCGACGTCGTGTGGATCGGCGTCTTTACCTTTGTC
TACCTGATGGGGTCGCTGCC

Downstream 100 bases:

>100_bases
CAAGATAGCCGGGGGACTTCAGGCGGCCAGGCGGAACGTCGCCACCGCTTCCTTGAGCCGCTGGGCCTGCTCTTCGAGCG
AGCCCGCGGCCGCCGCAGCC

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSAQDHAMDGHGHGHEHEEEVGPHATLGGYLTGFVLSVFLTAVPFWLVMGKVFEKSSTTAIAILLIGAVQIVVHMIYFLH
MNAKSEGGWNMLSLMFTLTLVVITLTGSLWVMFHLNSNMMPQMRHTQQAAESGGTIVPPRTK

Sequences:

>Translated_142_residues
MSAQDHAMDGHGHGHEHEEEVGPHATLGGYLTGFVLSVFLTAVPFWLVMGKVFEKSSTTAIAILLIGAVQIVVHMIYFLH
MNAKSEGGWNMLSLMFTLTLVVITLTGSLWVMFHLNSNMMPQMRHTQQAAESGGTIVPPRTK
>Mature_141_residues
SAQDHAMDGHGHGHEHEEEVGPHATLGGYLTGFVLSVFLTAVPFWLVMGKVFEKSSTTAIAILLIGAVQIVVHMIYFLHM
NAKSEGGWNMLSLMFTLTLVVITLTGSLWVMFHLNSNMMPQMRHTQQAAESGGTIVPPRTK

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=107, Percent_Identity=41.1214953271028, Blast_Score=96, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 15574; Mature: 15443

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.1 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQDHAMDGHGHGHEHEEEVGPHATLGGYLTGFVLSVFLTAVPFWLVMGKVFEKSSTTA
CCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IAILLIGAVQIVVHMIYFLHMNAKSEGGWNMLSLMFTLTLVVITLTGSLWVMFHLNSNMM
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
PQMRHTQQAAESGGTIVPPRTK
HHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SAQDHAMDGHGHGHEHEEEVGPHATLGGYLTGFVLSVFLTAVPFWLVMGKVFEKSSTTA
CCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IAILLIGAVQIVVHMIYFLHMNAKSEGGWNMLSLMFTLTLVVITLTGSLWVMFHLNSNMM
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
PQMRHTQQAAESGGTIVPPRTK
HHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]