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The map label for this gene is caiB [H]

Identifier: 94314462

GI number: 94314462

Start: 2288449

End: 2289714

Strand: Reverse

Name: caiB [H]

Synonym: Rmet_5543

Alternate gene names: 94314462

Gene position: 2289714-2288449 (Counterclockwise)

Preceding gene: 94314463

Following gene: 94314461

Centisome position: 88.75

GC content: 58.85

Gene sequence:

>1266_bases
ATGTTCGACCAAGCTCGCGTTGAATCCTTACCGGAACATGAGGCTGGTGGGCCAAAGAGCGGCGGCGTCCTGGATGGCGT
CCGTGTAATTGATTTCACGCACTTTGTCGCCGGACCATTGGCCACGATGACGATGGCCGACTTTGGTGCCGATGTCATCA
AGGTAGAGGCGCCCGTGAAGGGCGATGATTTTCGGTACTACCCGCCGATGGACCCGGAAATTCCGGCTCAGGGTGCTCCC
TACCTGTGGACCAACCGTAACAAGCGAAGCATCGGCATCGATATGAAGTCGCCGGAGGGCCTGGCCCTCGCAAAGTCATT
GATCGCAGAGGCGGATGTCGTTGTTGAGAACTTCTCGACCGGCGTGATGGAGCGTTTTGGGCTCGACTACGAGACCTGTC
GCAAGCTCAACCCAAGGCTCATCTATTGCTCGGTCTCGGCGTATGGGCGGACAGGGCCCTATGCGGATCGCCTCGGATTC
GACCCTATCGCGCAAGCTGAGAGCGGCTTCATCTCGATGAACGGCTACTCGGACCGCCAGGGAGTCCGGACCGGCGCCGC
AGTGATGGACATCAGTACCGCAATGATGGCGACTAACGCGATCCTTCTCGCCCTGCTGGGACGCGCGAAGGACGGCGAAG
GTCAGTTTGTCGAGGTCGCACTTTTCGACACAGCCATTCTGATGACTGGGTTCGCAGCCATGCAGCATTTGACGACCGGC
TATGAACCTCAGCGTAACGGTAATACCAGCCCGGATACGTGTCCGTCGGGCGTTTTCCACTGCCAGGACGTGCCGTTCTA
CATCAACTGCGGCAACGACGGGATCTTCGTCCGGCTGTTTGAACAGGTACTTGATCGCCCAGACATCGCTCATGACCCCG
TCTTGTCGAAGCGGGCCAATCGCTTGGAGCGACGCGACGAGCTATTCAAACTCATGGGGGAAGAATTCGGCAAGCATCCG
TGGGCCTATTGGCAGCCGAAACTCCGCGCAGCCGGGGTTCCAAGTGGTCAAGTCAAAACGCTGGCTCAGGCACTCTCGTC
TGACGAAGCAGCCTCTCGCAACCTGGTTAGCCGAATCCAGCATCCAGTGAAAGGTTGGATTCCCAATATTTCTACGCCTC
TTAGGCTTAGTCGTACGCCAGCGCGGGCTGCAACGGCCGCACCCGCCGTCGGCGCTGACACCGAGCAGGTGCTCAAGGAC
GTTCTCAAACTCAGCGACCGCCAAATCTCTGAACTCACAGCCTCCGGGGCGTTTGGTGCGAAGTAG

Upstream 100 bases:

>100_bases
CATTAAACGGATCAACCAAAGCGGCCGATTTGACCGCGGCTAACAAAACAGAAGCAGAAAGAGGCTTATAGGGCTCTTGC
TGCGGAACGAGGGGAGAGAC

Downstream 100 bases:

>100_bases
GTTCGACTCAACCACGGATATGACCAGAAACGTAGCAATTATTGAATCGCCCCGGGTTTTGCGGAGGCTCTCACTCTTGA
GAGAATGCGAGCCATGAGCA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MFDQARVESLPEHEAGGPKSGGVLDGVRVIDFTHFVAGPLATMTMADFGADVIKVEAPVKGDDFRYYPPMDPEIPAQGAP
YLWTNRNKRSIGIDMKSPEGLALAKSLIAEADVVVENFSTGVMERFGLDYETCRKLNPRLIYCSVSAYGRTGPYADRLGF
DPIAQAESGFISMNGYSDRQGVRTGAAVMDISTAMMATNAILLALLGRAKDGEGQFVEVALFDTAILMTGFAAMQHLTTG
YEPQRNGNTSPDTCPSGVFHCQDVPFYINCGNDGIFVRLFEQVLDRPDIAHDPVLSKRANRLERRDELFKLMGEEFGKHP
WAYWQPKLRAAGVPSGQVKTLAQALSSDEAASRNLVSRIQHPVKGWIPNISTPLRLSRTPARAATAAPAVGADTEQVLKD
VLKLSDRQISELTASGAFGAK

Sequences:

>Translated_421_residues
MFDQARVESLPEHEAGGPKSGGVLDGVRVIDFTHFVAGPLATMTMADFGADVIKVEAPVKGDDFRYYPPMDPEIPAQGAP
YLWTNRNKRSIGIDMKSPEGLALAKSLIAEADVVVENFSTGVMERFGLDYETCRKLNPRLIYCSVSAYGRTGPYADRLGF
DPIAQAESGFISMNGYSDRQGVRTGAAVMDISTAMMATNAILLALLGRAKDGEGQFVEVALFDTAILMTGFAAMQHLTTG
YEPQRNGNTSPDTCPSGVFHCQDVPFYINCGNDGIFVRLFEQVLDRPDIAHDPVLSKRANRLERRDELFKLMGEEFGKHP
WAYWQPKLRAAGVPSGQVKTLAQALSSDEAASRNLVSRIQHPVKGWIPNISTPLRLSRTPARAATAAPAVGADTEQVLKD
VLKLSDRQISELTASGAFGAK
>Mature_421_residues
MFDQARVESLPEHEAGGPKSGGVLDGVRVIDFTHFVAGPLATMTMADFGADVIKVEAPVKGDDFRYYPPMDPEIPAQGAP
YLWTNRNKRSIGIDMKSPEGLALAKSLIAEADVVVENFSTGVMERFGLDYETCRKLNPRLIYCSVSAYGRTGPYADRLGF
DPIAQAESGFISMNGYSDRQGVRTGAAVMDISTAMMATNAILLALLGRAKDGEGQFVEVALFDTAILMTGFAAMQHLTTG
YEPQRNGNTSPDTCPSGVFHCQDVPFYINCGNDGIFVRLFEQVLDRPDIAHDPVLSKRANRLERRDELFKLMGEEFGKHP
WAYWQPKLRAAGVPSGQVKTLAQALSSDEAASRNLVSRIQHPVKGWIPNISTPLRLSRTPARAATAAPAVGADTEQVLKD
VLKLSDRQISELTASGAFGAK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=393, Percent_Identity=33.3333333333333, Blast_Score=246, Evalue=2e-65,
Organism=Homo sapiens, GI300863124, Length=419, Percent_Identity=31.5035799522673, Blast_Score=234, Evalue=2e-61,
Organism=Homo sapiens, GI300863126, Length=393, Percent_Identity=30.2798982188295, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI13376042, Length=419, Percent_Identity=28.1622911694511, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI266458393, Length=226, Percent_Identity=28.7610619469027, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI266456254, Length=226, Percent_Identity=29.646017699115, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI42794625, Length=226, Percent_Identity=29.646017699115, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI266458397, Length=226, Percent_Identity=28.7610619469027, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=34.9315068493151, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=34.9315068493151, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI87082093, Length=338, Percent_Identity=34.6153846153846, Blast_Score=217, Evalue=9e-58,
Organism=Escherichia coli, GI1788717, Length=423, Percent_Identity=29.3144208037825, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1786222, Length=410, Percent_Identity=23.4146341463415, Blast_Score=85, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=216, Percent_Identity=25.9259259259259, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648431, Length=389, Percent_Identity=34.1902313624679, Blast_Score=223, Evalue=2e-58,
Organism=Drosophila melanogaster, GI24585488, Length=226, Percent_Identity=29.2035398230088, Blast_Score=100, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45747; Mature: 45747

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDQARVESLPEHEAGGPKSGGVLDGVRVIDFTHFVAGPLATMTMADFGADVIKVEAPVK
CCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
GDDFRYYPPMDPEIPAQGAPYLWTNRNKRSIGIDMKSPEGLALAKSLIAEADVVVENFST
CCCCEECCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
GVMERFGLDYETCRKLNPRLIYCSVSAYGRTGPYADRLGFDPIAQAESGFISMNGYSDRQ
HHHHHHCCCHHHHHCCCCEEEEEEEECCCCCCCCHHHCCCCCHHHCCCCEEEECCCCCCC
GVRTGAAVMDISTAMMATNAILLALLGRAKDGEGQFVEVALFDTAILMTGFAAMQHLTTG
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCC
YEPQRNGNTSPDTCPSGVFHCQDVPFYINCGNDGIFVRLFEQVLDRPDIAHDPVLSKRAN
CCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
RLERRDELFKLMGEEFGKHPWAYWQPKLRAAGVPSGQVKTLAQALSSDEAASRNLVSRIQ
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
HPVKGWIPNISTPLRLSRTPARAATAAPAVGADTEQVLKDVLKLSDRQISELTASGAFGA
HHHHHCCCCCCCCCEECCCCCHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCC
K
C
>Mature Secondary Structure
MFDQARVESLPEHEAGGPKSGGVLDGVRVIDFTHFVAGPLATMTMADFGADVIKVEAPVK
CCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
GDDFRYYPPMDPEIPAQGAPYLWTNRNKRSIGIDMKSPEGLALAKSLIAEADVVVENFST
CCCCEECCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
GVMERFGLDYETCRKLNPRLIYCSVSAYGRTGPYADRLGFDPIAQAESGFISMNGYSDRQ
HHHHHHCCCHHHHHCCCCEEEEEEEECCCCCCCCHHHCCCCCHHHCCCCEEEECCCCCCC
GVRTGAAVMDISTAMMATNAILLALLGRAKDGEGQFVEVALFDTAILMTGFAAMQHLTTG
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCC
YEPQRNGNTSPDTCPSGVFHCQDVPFYINCGNDGIFVRLFEQVLDRPDIAHDPVLSKRAN
CCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
RLERRDELFKLMGEEFGKHPWAYWQPKLRAAGVPSGQVKTLAQALSSDEAASRNLVSRIQ
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
HPVKGWIPNISTPLRLSRTPARAATAAPAVGADTEQVLKDVLKLSDRQISELTASGAFGA
HHHHHCCCCCCCCCEECCCCCHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]