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The map label for this gene is ybjD [H]

Identifier: 94314407

GI number: 94314407

Start: 2230725

End: 2232521

Strand: Reverse

Name: ybjD [H]

Synonym: Rmet_5488

Alternate gene names: 94314407

Gene position: 2232521-2230725 (Counterclockwise)

Preceding gene: 94314409

Following gene: 94314406

Centisome position: 86.53

GC content: 54.26

Gene sequence:

>1797_bases
ATGAAGTTGAAGCGCATCTATATCAGCAACTTCCGCAACTTCGAACAGATTGACGTTGCATTGGACGGAAGTGTAGTTGT
GGTCGGCGAAAACAGGGTTGGCAAGAGCAACCTGCTCTTCGCCCTGCGCCTTATCTTGGATCCGAGCCTCCCTGATAGCG
CTCGCCAGTTGGGGCAAGGGGATTTTTGGGATGGCCTAGGTGAGCCTCTAGAGGACGAGCGCATTACCGTGTTCGTCGAA
CTCATTGAGTTTGCTAACGACATGGATTTGCTTGCTGTCCTGACCGACTATCGGCTGGACGATGACCCTGACACCGTGCG
GCTAACCTATGAGTTCCGGCCTATCGCCGGCCTCGCTGGGTTTCCGCAGGCTGATGAGGATTATGAGTTCATCTGTTTCG
GGGGAGAGTCGGAGAATAAGCGGTTTGGGCACGATGTGCGCCGGCGTGTTGCAATGGACCTGCTTCCAGCCTTGCGAGAT
GCTGAGGGTGACCTTGCAGTTTGGCGCCGTTCGCCACTTCGGCCTTTGCTAGAGCGCGCATTTGCGGAAGTTCCCAGCCA
AGACCTCGGGCAAGTGAGGGATGTGGTTCAGCAAGCAACGCAGCAACTGGCCGAATTCCCGACGGTGCAGGCTCTCCAGC
AGCGTTTGAGAGACCTCTTCGTCTCCATGAGCGGTCCTAAACAGGACATTCAGCCAGCTCTCGGCTTCGGCACCACCGAC
GTAACCAGGCTCATCAGAAATTTGAAGCTGCTCATCGATGGCGGCCTCAGAACCATTGGTGATGCGAGCTTAGGGTCGGC
CAACGTGGCGTTTCTAACCCTTAAGGCCCTCGAACTGCAGCAGTTGATGAGTGAAAACCGTCGGGACCACACGGTGCTGG
CCATCGAGGAACCTGAAGCTCATCTGCATCCTCACTTGCAACGATCTGTATATCGACATCTATTTGAGGATTTGGCCGGA
GCACAAGGTGAACAACTCTCCCTTATGCTTACAACACACTCGCCGCATATCGCGAGTGTGGCGCCTCTGAGGTCCCTTGT
TCTATTGCGAGAGTCTCCGCAGAACGGCACTGTGGGGACATCCTCTGCAGAAATTTCTCTCACCGAGGATGAAGAAGATG
ACCTCGCTCGCTATCTCGACGTTACGCGGGCAGAAATGCTGTTTGCTAGAGGCATCATCTTGGTCGAGGGCGACGCTGAG
AAGTTCTTGTTGCCTGTGATGGCCGCTTCGATGGGGCACGACCTTGACCATCTGGGTATTACGATATGCTCGGTGTCGGG
AACGAACTTCACTCCCTATGCGAAGTTCCTCACGGCGTTGGGCATCCCATTTTCCATCATTACGGACTGGGACCCAAGAG
TGGGGAAGAAGCCGCTAGGTTTTAACCGCTCATGGCGTCTGGTCGAGAGCATCGAGCAGACACTTACAGGAGTTGCGCAG
CCGAAATTGGTTCAGGAACTCGTCGCCATAGCCGACTACGATGACTTCTGTTTGCGATGCGAGGACTTCGGCATCTTTTC
AAACTTCGTCACGTTGGAAGTCGACTTGTTTGATGACCAAGATTTTACCGGCGAGATCATCGCAACCCTTCGAGAGTCGA
ATTGGAGCGAGGAACGCCGTGCGTGGATCGACGCATGGGAGGACGACCCTGACAAGTTGAACGCCGAGAATTATTTGAAA
CTTATCGATGGTGTCGGAAAGGGGCGTTTTGCCCAGAGGCTAGCGTCAAAGATTGTGGGTGCCATCCCTCCTGAATACAT
ATCTAAAGCGATCTCCTACGTAGTCAATCGTGTCTAA

Upstream 100 bases:

>100_bases
GCGCACCCATGCATATGCTGGCAGCGCAGTCCTCTAGTGAGGAGCATCGCAAGAGGCCTTTACAAGAACCTACCAAGCGA
GCGCTATTCGCTCTAGAACC

Downstream 100 bases:

>100_bases
TCGCGCCGCCTATCTTCAAGCTGCCGAGGAGCTTCGCGACAATCCTGGGCAGTGGGCAGCTTACGAGTCGCGAGGACACT
GTGTAGTCTTGGCTGGTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 598; Mature: 598

Protein sequence:

>598_residues
MKLKRIYISNFRNFEQIDVALDGSVVVVGENRVGKSNLLFALRLILDPSLPDSARQLGQGDFWDGLGEPLEDERITVFVE
LIEFANDMDLLAVLTDYRLDDDPDTVRLTYEFRPIAGLAGFPQADEDYEFICFGGESENKRFGHDVRRRVAMDLLPALRD
AEGDLAVWRRSPLRPLLERAFAEVPSQDLGQVRDVVQQATQQLAEFPTVQALQQRLRDLFVSMSGPKQDIQPALGFGTTD
VTRLIRNLKLLIDGGLRTIGDASLGSANVAFLTLKALELQQLMSENRRDHTVLAIEEPEAHLHPHLQRSVYRHLFEDLAG
AQGEQLSLMLTTHSPHIASVAPLRSLVLLRESPQNGTVGTSSAEISLTEDEEDDLARYLDVTRAEMLFARGIILVEGDAE
KFLLPVMAASMGHDLDHLGITICSVSGTNFTPYAKFLTALGIPFSIITDWDPRVGKKPLGFNRSWRLVESIEQTLTGVAQ
PKLVQELVAIADYDDFCLRCEDFGIFSNFVTLEVDLFDDQDFTGEIIATLRESNWSEERRAWIDAWEDDPDKLNAENYLK
LIDGVGKGRFAQRLASKIVGAIPPEYISKAISYVVNRV

Sequences:

>Translated_598_residues
MKLKRIYISNFRNFEQIDVALDGSVVVVGENRVGKSNLLFALRLILDPSLPDSARQLGQGDFWDGLGEPLEDERITVFVE
LIEFANDMDLLAVLTDYRLDDDPDTVRLTYEFRPIAGLAGFPQADEDYEFICFGGESENKRFGHDVRRRVAMDLLPALRD
AEGDLAVWRRSPLRPLLERAFAEVPSQDLGQVRDVVQQATQQLAEFPTVQALQQRLRDLFVSMSGPKQDIQPALGFGTTD
VTRLIRNLKLLIDGGLRTIGDASLGSANVAFLTLKALELQQLMSENRRDHTVLAIEEPEAHLHPHLQRSVYRHLFEDLAG
AQGEQLSLMLTTHSPHIASVAPLRSLVLLRESPQNGTVGTSSAEISLTEDEEDDLARYLDVTRAEMLFARGIILVEGDAE
KFLLPVMAASMGHDLDHLGITICSVSGTNFTPYAKFLTALGIPFSIITDWDPRVGKKPLGFNRSWRLVESIEQTLTGVAQ
PKLVQELVAIADYDDFCLRCEDFGIFSNFVTLEVDLFDDQDFTGEIIATLRESNWSEERRAWIDAWEDDPDKLNAENYLK
LIDGVGKGRFAQRLASKIVGAIPPEYISKAISYVVNRV
>Mature_598_residues
MKLKRIYISNFRNFEQIDVALDGSVVVVGENRVGKSNLLFALRLILDPSLPDSARQLGQGDFWDGLGEPLEDERITVFVE
LIEFANDMDLLAVLTDYRLDDDPDTVRLTYEFRPIAGLAGFPQADEDYEFICFGGESENKRFGHDVRRRVAMDLLPALRD
AEGDLAVWRRSPLRPLLERAFAEVPSQDLGQVRDVVQQATQQLAEFPTVQALQQRLRDLFVSMSGPKQDIQPALGFGTTD
VTRLIRNLKLLIDGGLRTIGDASLGSANVAFLTLKALELQQLMSENRRDHTVLAIEEPEAHLHPHLQRSVYRHLFEDLAG
AQGEQLSLMLTTHSPHIASVAPLRSLVLLRESPQNGTVGTSSAEISLTEDEEDDLARYLDVTRAEMLFARGIILVEGDAE
KFLLPVMAASMGHDLDHLGITICSVSGTNFTPYAKFLTALGIPFSIITDWDPRVGKKPLGFNRSWRLVESIEQTLTGVAQ
PKLVQELVAIADYDDFCLRCEDFGIFSNFVTLEVDLFDDQDFTGEIIATLRESNWSEERRAWIDAWEDDPDKLNAENYLK
LIDGVGKGRFAQRLASKIVGAIPPEYISKAISYVVNRV

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=174, Percent_Identity=31.6091954022989, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 66917; Mature: 66917

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKRIYISNFRNFEQIDVALDGSVVVVGENRVGKSNLLFALRLILDPSLPDSARQLGQG
CCCEEEEHHCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHCCCC
DFWDGLGEPLEDERITVFVELIEFANDMDLLAVLTDYRLDDDPDTVRLTYEFRPIAGLAG
CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
FPQADEDYEFICFGGESENKRFGHDVRRRVAMDLLPALRDAEGDLAVWRRSPLRPLLERA
CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCCCHHHHHHHH
FAEVPSQDLGQVRDVVQQATQQLAEFPTVQALQQRLRDLFVSMSGPKQDIQPALGFGTTD
HHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCHHH
VTRLIRNLKLLIDGGLRTIGDASLGSANVAFLTLKALELQQLMSENRRDHTVLAIEEPEA
HHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCH
HLHPHLQRSVYRHLFEDLAGAQGEQLSLMLTTHSPHIASVAPLRSLVLLRESPQNGTVGT
HHCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
SSAEISLTEDEEDDLARYLDVTRAEMLFARGIILVEGDAEKFLLPVMAASMGHDLDHLGI
CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCHHCCE
TICSVSGTNFTPYAKFLTALGIPFSIITDWDPRVGKKPLGFNRSWRLVESIEQTLTGVAQ
EEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PKLVQELVAIADYDDFCLRCEDFGIFSNFVTLEVDLFDDQDFTGEIIATLRESNWSEERR
HHHHHHHHHHCCCCHHHEEECCCCCEECEEEEEEEEECCCCCCHHHHHHHHHCCCCHHHH
AWIDAWEDDPDKLNAENYLKLIDGVGKGRFAQRLASKIVGAIPPEYISKAISYVVNRV
HHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLKRIYISNFRNFEQIDVALDGSVVVVGENRVGKSNLLFALRLILDPSLPDSARQLGQG
CCCEEEEHHCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHCCCC
DFWDGLGEPLEDERITVFVELIEFANDMDLLAVLTDYRLDDDPDTVRLTYEFRPIAGLAG
CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC
FPQADEDYEFICFGGESENKRFGHDVRRRVAMDLLPALRDAEGDLAVWRRSPLRPLLERA
CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCCCHHHHHHHH
FAEVPSQDLGQVRDVVQQATQQLAEFPTVQALQQRLRDLFVSMSGPKQDIQPALGFGTTD
HHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCHHH
VTRLIRNLKLLIDGGLRTIGDASLGSANVAFLTLKALELQQLMSENRRDHTVLAIEEPEA
HHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCH
HLHPHLQRSVYRHLFEDLAGAQGEQLSLMLTTHSPHIASVAPLRSLVLLRESPQNGTVGT
HHCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
SSAEISLTEDEEDDLARYLDVTRAEMLFARGIILVEGDAEKFLLPVMAASMGHDLDHLGI
CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCHHCCE
TICSVSGTNFTPYAKFLTALGIPFSIITDWDPRVGKKPLGFNRSWRLVESIEQTLTGVAQ
EEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PKLVQELVAIADYDDFCLRCEDFGIFSNFVTLEVDLFDDQDFTGEIIATLRESNWSEERR
HHHHHHHHHHCCCCHHHEEECCCCCEECEEEEEEEEECCCCCCHHHHHHHHHCCCCHHHH
AWIDAWEDDPDKLNAENYLKLIDGVGKGRFAQRLASKIVGAIPPEYISKAISYVVNRV
HHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]