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The map label for this gene is rssB [H]

Identifier: 94314311

GI number: 94314311

Start: 2117889

End: 2118548

Strand: Direct

Name: rssB [H]

Synonym: Rmet_5392

Alternate gene names: 94314311

Gene position: 2117889-2118548 (Clockwise)

Preceding gene: 94314306

Following gene: 94314312

Centisome position: 82.09

GC content: 62.58

Gene sequence:

>660_bases
ATGAGAGTTCTTCTCATCGAGGATGAACCGTGGCTTGGGCAGGCCGTCCGCGACCAGATCGAAAAGGACGGGCATCCGAC
CGACTTCGTGGCCAATCTCGCCGATGCGCGCCGACATCTTGCGGCCGCAACCTACGACCTGATCCTGCTAGACCTGCTGC
TGCCCGATGGCCGCGGCCTTGATTTCCTGCGTGAACTGCGCGCGAGCGGATCGAACGTGCCCATCATCATCCTGACCGCG
CTCGATCAGGTGTCGAATCGCATTGCCGGTCTGAACGCCGGCGCGGATGACTACCTGGTCAAGCCGTTCGACCTGTCCGA
ACTGTCCGCGCGCGTCAGCGCGGTGGCGCGTCGGTACGCGGGTAATCCGAATCCATTGGTGAATCTTGGCGACCTACGCA
TCGACACGGCCGGGCATAGCGTGATGCGCGGCGAAACCCGCGTCGACCTGACGGCCAGCGAATGGGCGCTGCTTGAGGCA
CTGATCCAGCATCCGGGCATGATCGTGTCGCGGGCAAGGCTCGAGGAACGGCTTTACTCCTTCAACGAGGAAGTCGGCAG
CAACACCATCGAGGTCCATATGAGCCGGCTGCGCAAGAAACTTGGCGCGGATGTCATCGAGACCTTGCGCGGGCTAGGCT
ATCGACTCAGGCGGGACTGA

Upstream 100 bases:

>100_bases
GCGAACCTGAAGCGAACCTTGCGATGGCAGAGAATTTTCTTCATGTTCGCGACAGGTTCGCGTGGCAATATCATGTGATA
CATGCTTCAGGGAAGCCGTA

Downstream 100 bases:

>100_bases
CGATGCTGCGCAGCCTGCAGGGCAGACTCTCGGCGGCGCTGGTGGCGGGGCTGGTCGTGCTGGCGTGCGCGGCGGCGGCG
GCATCGATCCACGTGCTGCG

Product: winged helix family two component transcriptional regulator ygiX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRVLLIEDEPWLGQAVRDQIEKDGHPTDFVANLADARRHLAAATYDLILLDLLLPDGRGLDFLRELRASGSNVPIIILTA
LDQVSNRIAGLNAGADDYLVKPFDLSELSARVSAVARRYAGNPNPLVNLGDLRIDTAGHSVMRGETRVDLTASEWALLEA
LIQHPGMIVSRARLEERLYSFNEEVGSNTIEVHMSRLRKKLGADVIETLRGLGYRLRRD

Sequences:

>Translated_219_residues
MRVLLIEDEPWLGQAVRDQIEKDGHPTDFVANLADARRHLAAATYDLILLDLLLPDGRGLDFLRELRASGSNVPIIILTA
LDQVSNRIAGLNAGADDYLVKPFDLSELSARVSAVARRYAGNPNPLVNLGDLRIDTAGHSVMRGETRVDLTASEWALLEA
LIQHPGMIVSRARLEERLYSFNEEVGSNTIEVHMSRLRKKLGADVIETLRGLGYRLRRD
>Mature_219_residues
MRVLLIEDEPWLGQAVRDQIEKDGHPTDFVANLADARRHLAAATYDLILLDLLLPDGRGLDFLRELRASGSNVPIIILTA
LDQVSNRIAGLNAGADDYLVKPFDLSELSARVSAVARRYAGNPNPLVNLGDLRIDTAGHSVMRGETRVDLTASEWALLEA
LIQHPGMIVSRARLEERLYSFNEEVGSNTIEVHMSRLRKKLGADVIETLRGLGYRLRRD

Specific function: Member of the two-component regulatory system rssA/rssB involved in regulation of swarming motility which has been shown to be inhibited by saturated fatty acids. RssA/rssB regulates cellular fatty acid composition, hemolysin production and cell surface t

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=41.2037037037037, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1790552, Length=216, Percent_Identity=39.8148148148148, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=37.10407239819, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1786911, Length=223, Percent_Identity=38.1165919282511, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=36.697247706422, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=35.1351351351351, Blast_Score=133, Evalue=9e-33,
Organism=Escherichia coli, GI87082012, Length=220, Percent_Identity=36.3636363636364, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=34.4978165938865, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=34.3612334801762, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=30.9734513274336, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787229, Length=225, Percent_Identity=34.2222222222222, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=32.7433628318584, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790863, Length=239, Percent_Identity=28.0334728033473, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI145693140, Length=186, Percent_Identity=31.1827956989247, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=31.4814814814815, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24329; Mature: 24329

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLIEDEPWLGQAVRDQIEKDGHPTDFVANLADARRHLAAATYDLILLDLLLPDGRGL
CEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
DFLRELRASGSNVPIIILTALDQVSNRIAGLNAGADDYLVKPFDLSELSARVSAVARRYA
HHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHC
GNPNPLVNLGDLRIDTAGHSVMRGETRVDLTASEWALLEALIQHPGMIVSRARLEERLYS
CCCCCEEEECCEEEECCCCHHHCCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FNEEVGSNTIEVHMSRLRKKLGADVIETLRGLGYRLRRD
HHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MRVLLIEDEPWLGQAVRDQIEKDGHPTDFVANLADARRHLAAATYDLILLDLLLPDGRGL
CEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
DFLRELRASGSNVPIIILTALDQVSNRIAGLNAGADDYLVKPFDLSELSARVSAVARRYA
HHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHC
GNPNPLVNLGDLRIDTAGHSVMRGETRVDLTASEWALLEALIQHPGMIVSRARLEERLYS
CCCCCEEEECCEEEECCCCHHHCCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FNEEVGSNTIEVHMSRLRKKLGADVIETLRGLGYRLRRD
HHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA