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The map label for this gene is nodW [H]

Identifier: 94314236

GI number: 94314236

Start: 2024333

End: 2024665

Strand: Direct

Name: nodW [H]

Synonym: Rmet_5317

Alternate gene names: 94314236

Gene position: 2024333-2024665 (Clockwise)

Preceding gene: 94314235

Following gene: 94314240

Centisome position: 78.46

GC content: 67.57

Gene sequence:

>333_bases
ATGGGGCAACTGGTGCGTTCGTTCGACCTGGCCGTGGAACTCTACGCCAGCGGGCAGGCACTGCTGCAGTCCGCTTCGAT
CGGGCGTATCCGGTGCGTGGTCTGCGACGTGCGAATGCCGGGCATCGACGGGTTCGCGCTCTGCACGGCGCTGCGCGCGC
TCGGGCTCGATGTGCCGGTCATCCTCATGACCGCCTATGCCCAGGATGGCGACGAACAGCGCGCCCTTGACGTGGGCGCC
ACCGGATTCCTCGGCAAGCCGTTTCAGGAGAGAGAATTGCTCCGGTGCCTGGCGCGTGCGCTGGCCAGCGGCGAGAGTGG
GTCGGGGATCTGA

Upstream 100 bases:

>100_bases
GGAGCAATGAGGGCCCCATTGAGGCCAATGTCCGGAGCACCGTGTGACTGCCCTTCCCCTAATCGCGATCGTTGACGATG
ACGCCTCCGTCAGGGACGCC

Downstream 100 bases:

>100_bases
CGCGCGGGCTATCCGGCGTCGTCCTGCACCAGCCCGAGAGACTGGGCCATGATGACCAGTTCGGCGAAAGTGCGGGCCTG
CATCTTGCGCATGGCGTGAC

Product: two-component response regulator (receiver domain-containing protein CheY-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MGQLVRSFDLAVELYASGQALLQSASIGRIRCVVCDVRMPGIDGFALCTALRALGLDVPVILMTAYAQDGDEQRALDVGA
TGFLGKPFQERELLRCLARALASGESGSGI

Sequences:

>Translated_110_residues
MGQLVRSFDLAVELYASGQALLQSASIGRIRCVVCDVRMPGIDGFALCTALRALGLDVPVILMTAYAQDGDEQRALDVGA
TGFLGKPFQERELLRCLARALASGESGSGI
>Mature_109_residues
GQLVRSFDLAVELYASGQALLQSASIGRIRCVVCDVRMPGIDGFALCTALRALGLDVPVILMTAYAQDGDEQRALDVGAT
GFLGKPFQERELLRCLARALASGESGSGI

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process [H]

COG id: COG4566

COG function: function code T; Response regulator

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 11604; Mature: 11472

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQLVRSFDLAVELYASGQALLQSASIGRIRCVVCDVRMPGIDGFALCTALRALGLDVPV
CCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCHH
ILMTAYAQDGDEQRALDVGATGFLGKPFQERELLRCLARALASGESGSGI
HHHHHHHCCCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GQLVRSFDLAVELYASGQALLQSASIGRIRCVVCDVRMPGIDGFALCTALRALGLDVPV
CCHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCHH
ILMTAYAQDGDEQRALDVGATGFLGKPFQERELLRCLARALASGESGSGI
HHHHHHHCCCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]