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The map label for this gene is vioA [C]

Identifier: 94314155

GI number: 94314155

Start: 1935098

End: 1936243

Strand: Direct

Name: vioA [C]

Synonym: Rmet_5236

Alternate gene names: 94314155

Gene position: 1935098-1936243 (Clockwise)

Preceding gene: 94314154

Following gene: 94314156

Centisome position: 75.0

GC content: 60.56

Gene sequence:

>1146_bases
ATGACAGCCAGCCTTCCGTCGGAATCCGTGCGCGCCCTGCTCGAGGACCGCATCTACGTCACCCAGCCACACCTGCCTCC
GCTCGACGAGTTCCTGCCCTATCTGCAGCAGATCTGGAACTCGCGCGTGTTGACCAATGGCGGGCCGTTTCACCAGCAGT
TCGAGCGTGAACTGTGCGAGTACCTTGGCGTCCCTTACCTGTCGCTGTTCGCCAATGGCACGCTCGCGCTCGTGACGGCG
CTACAGGCGCTGCGGATCACGGGAGAGGTCATCACGACGCCATACTCCTTTGTGGCGACGGCGCACTCGCTGCTGTGGAA
CGGCGTCAAGCCCGTCTTCGTCGACATCGACCCGCATACGATGAATCTCGATCCGGCAAAGATCGAGGCCGCGATCACAC
CGCAGACAACGGCGATCATGCCCGTGCATTGCTACGGCCACCCCTGCGATGTCGACGCGATCCAGAAGATCGCGGACAAC
TACAACCTCAGGGTGATCTACGATGCCGCCCATGCCTTCGGCGTCCGTAACGAAAGCGGCAGCATCCTGAAGCACGGCGA
CCTGTCGATTCTCAGCCTGCACGCCACCAAGGTCTTCAACACGTTCGAAGGTGGCGCCATCATCTGCCCCGATGCCAAGA
CAAAGCAGCGCATCGATCATCTGAAGAACTTCGGTTTTGTCGACGAAGTCACCGTCGTCGCTGCCGGCATCAACGGCAAG
ATGAGTGAAATCAACGCTGCGTTTGGGCTGCTGCAGTTGCAGCACATCGACGAGGCGCTCGAGCGCCGCAAGGCGATCGA
TGCACGCTATCGCGAACTGTTGCGCAACATCCCCGGCATTCGTTGCCAGGCGGATGCCGGCGAAACCACAGCCAACTACG
CGTACTTCCCCATTCACGTCGAAGCTGACTACCCGATCAGCCGGGATGCCCTGTTTGACAAGTTCCGCGAGCAAGGTATC
TTCGCTCGGCGCTACTTCTATCCGCTGATCTCGGATTTCCCGATGTATCGCGGCCTGCCGTCCGCCAGCCGCCATAACTT
GCCCATTGCATCGGAGGCGGCGCTGAAGGTGCTGTGCCTGCCGATCTATCCGGCGCTCACTGAAGAGCAAGTTCAGCGCG
TCGTGAGCATCATCGCGGAGCATTGA

Upstream 100 bases:

>100_bases
GGCGCCCGATAGCTTCGAAATCGAACCGGTTCAGAACACGGTTGCACCCGCCGCAGCCAGCGAGCACGCGCTCCAGCCCG
TCACGTAAGGATCAGCGACC

Downstream 100 bases:

>100_bases
GCATGCGGCTGGCAATCATGCAGCCCTATCTGTTCCCGTACCTCGGCTACTTCCAGCTAGCGGCATCGGTGGACCGTTTC
GTGGTCTACGACGATGTCAC

Product: DegT/DnrJ/EryC1/StrS family aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MTASLPSESVRALLEDRIYVTQPHLPPLDEFLPYLQQIWNSRVLTNGGPFHQQFERELCEYLGVPYLSLFANGTLALVTA
LQALRITGEVITTPYSFVATAHSLLWNGVKPVFVDIDPHTMNLDPAKIEAAITPQTTAIMPVHCYGHPCDVDAIQKIADN
YNLRVIYDAAHAFGVRNESGSILKHGDLSILSLHATKVFNTFEGGAIICPDAKTKQRIDHLKNFGFVDEVTVVAAGINGK
MSEINAAFGLLQLQHIDEALERRKAIDARYRELLRNIPGIRCQADAGETTANYAYFPIHVEADYPISRDALFDKFREQGI
FARRYFYPLISDFPMYRGLPSASRHNLPIASEAALKVLCLPIYPALTEEQVQRVVSIIAEH

Sequences:

>Translated_381_residues
MTASLPSESVRALLEDRIYVTQPHLPPLDEFLPYLQQIWNSRVLTNGGPFHQQFERELCEYLGVPYLSLFANGTLALVTA
LQALRITGEVITTPYSFVATAHSLLWNGVKPVFVDIDPHTMNLDPAKIEAAITPQTTAIMPVHCYGHPCDVDAIQKIADN
YNLRVIYDAAHAFGVRNESGSILKHGDLSILSLHATKVFNTFEGGAIICPDAKTKQRIDHLKNFGFVDEVTVVAAGINGK
MSEINAAFGLLQLQHIDEALERRKAIDARYRELLRNIPGIRCQADAGETTANYAYFPIHVEADYPISRDALFDKFREQGI
FARRYFYPLISDFPMYRGLPSASRHNLPIASEAALKVLCLPIYPALTEEQVQRVVSIIAEH
>Mature_380_residues
TASLPSESVRALLEDRIYVTQPHLPPLDEFLPYLQQIWNSRVLTNGGPFHQQFERELCEYLGVPYLSLFANGTLALVTAL
QALRITGEVITTPYSFVATAHSLLWNGVKPVFVDIDPHTMNLDPAKIEAAITPQTTAIMPVHCYGHPCDVDAIQKIADNY
NLRVIYDAAHAFGVRNESGSILKHGDLSILSLHATKVFNTFEGGAIICPDAKTKQRIDHLKNFGFVDEVTVVAAGINGKM
SEINAAFGLLQLQHIDEALERRKAIDARYRELLRNIPGIRCQADAGETTANYAYFPIHVEADYPISRDALFDKFREQGIF
ARRYFYPLISDFPMYRGLPSASRHNLPIASEAALKVLCLPIYPALTEEQVQRVVSIIAEH

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=380, Percent_Identity=29.7368421052632, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI2367285, Length=324, Percent_Identity=30.2469135802469, Blast_Score=114, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42531; Mature: 42400

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASLPSESVRALLEDRIYVTQPHLPPLDEFLPYLQQIWNSRVLTNGGPFHQQFERELCE
CCCCCCHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHH
YLGVPYLSLFANGTLALVTALQALRITGEVITTPYSFVATAHSLLWNGVKPVFVDIDPHT
HHCCCHHHHHCCCHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCE
MNLDPAKIEAAITPQTTAIMPVHCYGHPCDVDAIQKIADNYNLRVIYDAAHAFGVRNESG
ECCCHHHEEEEECCCCEEEEEEEECCCCCCHHHHHHHHCCCCEEEEEECHHHHCCCCCCC
SILKHGDLSILSLHATKVFNTFEGGAIICPDAKTKQRIDHLKNFGFVDEVTVVAAGINGK
CEEECCCEEEEEEEHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCHHEEEEEEECCCCC
MSEINAAFGLLQLQHIDEALERRKAIDARYRELLRNIPGIRCQADAGETTANYAYFPIHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEEEE
EADYPISRDALFDKFREQGIFARRYFYPLISDFPMYRGLPSASRHNLPIASEAALKVLCL
ECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHEEEEE
PIYPALTEEQVQRVVSIIAEH
ECCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TASLPSESVRALLEDRIYVTQPHLPPLDEFLPYLQQIWNSRVLTNGGPFHQQFERELCE
CCCCCHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHH
YLGVPYLSLFANGTLALVTALQALRITGEVITTPYSFVATAHSLLWNGVKPVFVDIDPHT
HHCCCHHHHHCCCHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCE
MNLDPAKIEAAITPQTTAIMPVHCYGHPCDVDAIQKIADNYNLRVIYDAAHAFGVRNESG
ECCCHHHEEEEECCCCEEEEEEEECCCCCCHHHHHHHHCCCCEEEEEECHHHHCCCCCCC
SILKHGDLSILSLHATKVFNTFEGGAIICPDAKTKQRIDHLKNFGFVDEVTVVAAGINGK
CEEECCCEEEEEEEHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCHHEEEEEEECCCCC
MSEINAAFGLLQLQHIDEALERRKAIDARYRELLRNIPGIRCQADAGETTANYAYFPIHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEEEE
EADYPISRDALFDKFREQGIFARRYFYPLISDFPMYRGLPSASRHNLPIASEAALKVLCL
ECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHEEEEE
PIYPALTEEQVQRVVSIIAEH
ECCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]