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The map label for this gene is cydA [H]

Identifier: 94314151

GI number: 94314151

Start: 1929174

End: 1930535

Strand: Direct

Name: cydA [H]

Synonym: Rmet_5232

Alternate gene names: 94314151

Gene position: 1929174-1930535 (Clockwise)

Preceding gene: 94314150

Following gene: 94314152

Centisome position: 74.77

GC content: 62.56

Gene sequence:

>1362_bases
GTGTTTGCAAGTGTCGATCCGGTGATACTGGCCCGCATCCAGTTCGCCGCGAATATCACGTTCCATATCCTCTTTCCCAC
CATCAGCATCTCTCTGGCGTGGGTCCTCCTGTTCTTCAAGCTGCGCTACAACAAGACCGGCGACGAAAACTGGATGGACG
CCTATCGCGTCTGGGTGAAGATTTTCGCGCTGACATTCGCGCTGGGCGTGGTCAGCGGCATCACGATGAGCTTCCAGTTC
GGCACCAACTGGCCGGGATACATGGAGACCGTCGGCAATATCGCGGGCCCGCTGCTGGCCTATGAAGTCCTGACCGCGTT
CTTCCTGGAAGCCACCTTCCTGGGCATCATGCTGTTTGGGATGCGCCGCGTCAGCAACCGGATGCACACCATCGCCACGC
TGCTGGTGGCAGGTGGCACCACGCTGTCGGCGTTCTGGATCCTGGCGCTGAACTCGTGGATGCAAACCCCGGCCGGCTTC
GAGATGATCGACGGCCGCGCGCATGTGACAAGCTGGATCGAGGTCATCTTCAACCCGTCCTTCCCCTACCGTCTGGTCCA
CATGCTGCTGGCTTCCGGTCTTACCGTTGCCTTCCTGGTGGCCGGTATTTCCGCATACCGCTGGCTGCGCAACGATCGCA
GCCGCGAAGTCCTGCATTCGATGCATACGGGCGTGGTGCTGGCGGCGATCCTGATTCCGCTGCAGATCGTGGCCGGCGAC
CTGCACGGCCTGAACACGCTGCATCACCAGCCGGCCAAGATCGCGGCGATGGAAGGCATATGGAAGACCGAGAAGGGCGC
GCCGGCTGTGCTGTTCGGCCTGCCCAACGCCACGACGCAGTCGAACGATTTCGAGATCGCGATTCCGAAGCTGGCATCGA
TCTACCTTACCCACAAAGTCGACGGCGAAATCAAGGGCATCGACGCATTTGCCGATCGCCACCCGCCCGTGGCCCCGCTG
TTCTTCGCGTTCCGCATCATGGTTGGCGTTGGCCTGCTGATGCTGGCGGCCTCGTGGGTCGCTGCGTGGCAGTTCCGCAA
GCGCCGCGCGCCCGCGCCGTGGATGGCGCGGCTGCTGGTGGCGATGACGTTCTCCGGCTGGGTCGCGCTGGTCGCCGGCT
GGTACGTCACCGAGATCGGCCGCCAGCCGTATCTGGTCTACGGCGTACTGACCACGGCGCAGGCCGCCTCCAAGGTGCCC
GCGACGATGATCGGCAGCACGCTTGCCATGTACCTGACGCTCTATGCCGTACTGATCGTCGCCTATATCTCGGTGGTATT
CCACTTGGCGCGCAAGGCCGGCAAGTCAAAGGACGATTCCTCCCAATCCGTTATCCCAGGTCAGCTCAGGAGCGCGCAAT
GA

Upstream 100 bases:

>100_bases
CGGCAGGGAGAAGGCCTCCAACAAGGCATCGAGCAAGCCAGCCCCCCGGGAAGCCGCCAAGGCCCCCGCGAAGTCCGCCC
GTTCCCGCAAGGAGTAATTC

Downstream 100 bases:

>100_bases
ACCCGGCCACGATGCACGATCTTTCCCAGCCGGCCGGCTGGATGCCGCTGGTGTTTCTGGCGTTGATGGGCTTGTCGATG
CTGATCTACGTGATCCTTGA

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MFASVDPVILARIQFAANITFHILFPTISISLAWVLLFFKLRYNKTGDENWMDAYRVWVKIFALTFALGVVSGITMSFQF
GTNWPGYMETVGNIAGPLLAYEVLTAFFLEATFLGIMLFGMRRVSNRMHTIATLLVAGGTTLSAFWILALNSWMQTPAGF
EMIDGRAHVTSWIEVIFNPSFPYRLVHMLLASGLTVAFLVAGISAYRWLRNDRSREVLHSMHTGVVLAAILIPLQIVAGD
LHGLNTLHHQPAKIAAMEGIWKTEKGAPAVLFGLPNATTQSNDFEIAIPKLASIYLTHKVDGEIKGIDAFADRHPPVAPL
FFAFRIMVGVGLLMLAASWVAAWQFRKRRAPAPWMARLLVAMTFSGWVALVAGWYVTEIGRQPYLVYGVLTTAQAASKVP
ATMIGSTLAMYLTLYAVLIVAYISVVFHLARKAGKSKDDSSQSVIPGQLRSAQ

Sequences:

>Translated_453_residues
MFASVDPVILARIQFAANITFHILFPTISISLAWVLLFFKLRYNKTGDENWMDAYRVWVKIFALTFALGVVSGITMSFQF
GTNWPGYMETVGNIAGPLLAYEVLTAFFLEATFLGIMLFGMRRVSNRMHTIATLLVAGGTTLSAFWILALNSWMQTPAGF
EMIDGRAHVTSWIEVIFNPSFPYRLVHMLLASGLTVAFLVAGISAYRWLRNDRSREVLHSMHTGVVLAAILIPLQIVAGD
LHGLNTLHHQPAKIAAMEGIWKTEKGAPAVLFGLPNATTQSNDFEIAIPKLASIYLTHKVDGEIKGIDAFADRHPPVAPL
FFAFRIMVGVGLLMLAASWVAAWQFRKRRAPAPWMARLLVAMTFSGWVALVAGWYVTEIGRQPYLVYGVLTTAQAASKVP
ATMIGSTLAMYLTLYAVLIVAYISVVFHLARKAGKSKDDSSQSVIPGQLRSAQ
>Mature_453_residues
MFASVDPVILARIQFAANITFHILFPTISISLAWVLLFFKLRYNKTGDENWMDAYRVWVKIFALTFALGVVSGITMSFQF
GTNWPGYMETVGNIAGPLLAYEVLTAFFLEATFLGIMLFGMRRVSNRMHTIATLLVAGGTTLSAFWILALNSWMQTPAGF
EMIDGRAHVTSWIEVIFNPSFPYRLVHMLLASGLTVAFLVAGISAYRWLRNDRSREVLHSMHTGVVLAAILIPLQIVAGD
LHGLNTLHHQPAKIAAMEGIWKTEKGAPAVLFGLPNATTQSNDFEIAIPKLASIYLTHKVDGEIKGIDAFADRHPPVAPL
FFAFRIMVGVGLLMLAASWVAAWQFRKRRAPAPWMARLLVAMTFSGWVALVAGWYVTEIGRQPYLVYGVLTTAQAASKVP
ATMIGSTLAMYLTLYAVLIVAYISVVFHLARKAGKSKDDSSQSVIPGQLRSAQ

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=513, Percent_Identity=32.1637426900585, Blast_Score=234, Evalue=8e-63,
Organism=Escherichia coli, GI87081779, Length=528, Percent_Identity=31.4393939393939, Blast_Score=212, Evalue=5e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49961; Mature: 49961

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFASVDPVILARIQFAANITFHILFPTISISLAWVLLFFKLRYNKTGDENWMDAYRVWVK
CCCCCCHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
IFALTFALGVVSGITMSFQFGTNWPGYMETVGNIAGPLLAYEVLTAFFLEATFLGIMLFG
HHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRRVSNRMHTIATLLVAGGTTLSAFWILALNSWMQTPAGFEMIDGRAHVTSWIEVIFNPS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCC
FPYRLVHMLLASGLTVAFLVAGISAYRWLRNDRSREVLHSMHTGVVLAAILIPLQIVAGD
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHGLNTLHHQPAKIAAMEGIWKTEKGAPAVLFGLPNATTQSNDFEIAIPKLASIYLTHKV
HHHHHHHCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCHHHHEEEEEEC
DGEIKGIDAFADRHPPVAPLFFAFRIMVGVGLLMLAASWVAAWQFRKRRAPAPWMARLLV
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AMTFSGWVALVAGWYVTEIGRQPYLVYGVLTTAQAASKVPATMIGSTLAMYLTLYAVLIV
HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AYISVVFHLARKAGKSKDDSSQSVIPGQLRSAQ
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFASVDPVILARIQFAANITFHILFPTISISLAWVLLFFKLRYNKTGDENWMDAYRVWVK
CCCCCCHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
IFALTFALGVVSGITMSFQFGTNWPGYMETVGNIAGPLLAYEVLTAFFLEATFLGIMLFG
HHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRRVSNRMHTIATLLVAGGTTLSAFWILALNSWMQTPAGFEMIDGRAHVTSWIEVIFNPS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCC
FPYRLVHMLLASGLTVAFLVAGISAYRWLRNDRSREVLHSMHTGVVLAAILIPLQIVAGD
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHGLNTLHHQPAKIAAMEGIWKTEKGAPAVLFGLPNATTQSNDFEIAIPKLASIYLTHKV
HHHHHHHCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCHHHHEEEEEEC
DGEIKGIDAFADRHPPVAPLFFAFRIMVGVGLLMLAASWVAAWQFRKRRAPAPWMARLLV
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AMTFSGWVALVAGWYVTEIGRQPYLVYGVLTTAQAASKVPATMIGSTLAMYLTLYAVLIV
HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AYISVVFHLARKAGKSKDDSSQSVIPGQLRSAQ
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]