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The map label for this gene is cydB [H]

Identifier: 94314152

GI number: 94314152

Start: 1930532

End: 1931569

Strand: Direct

Name: cydB [H]

Synonym: Rmet_5233

Alternate gene names: 94314152

Gene position: 1930532-1931569 (Clockwise)

Preceding gene: 94314151

Following gene: 94314153

Centisome position: 74.82

GC content: 64.74

Gene sequence:

>1038_bases
ATGAACCCGGCCACGATGCACGATCTTTCCCAGCCGGCCGGCTGGATGCCGCTGGTGTTTCTGGCGTTGATGGGCTTGTC
GATGCTGATCTACGTGATCCTTGACGGCTACGATCTTGGCGTGGGCGTGCTGCTGCGGCGCGCCGACGACGTCGACAAGG
ACACCATGATCGCCTCGATCGGCCCGTTCTGGGACGCCAACGAAACGTGGCTCGTGCTCGGCGTGGGCCTGCTGCTGACC
GCGTTTCCGATGGCGCACGGCGTCATCCTGACGCAGCTGTACCTGCCCGTGGCGCTGATGCTGGCCGGCCTGATCATCCG
TGGCGTCGCCTTCGACTTCCGCGTCAAGGCACGGGACCCGCACAAGCCCTGGTGGAACTTCGCGTTCTATGCGGGCTCGC
TGCTGGCCAGCTTCTCGCAGGGTCTGATGCTCGGCCTGTACATCACCGGCTTCCGCTACGACCTTCCCAACCTGCTGTTC
GCCGTGGCCGTTGGCCTGTGCCTGGTGGCCGGCTACTGCCTGCTGGGCGCAAGCTGGCTGATCATGAAGACCACGGGCAA
CCTGCAGTTGCGCGCGATCTACTGGGCGCGCCGCAGCCTGTGGCTCACCGCGATTGGCGTGGCCGCCATCTCGATCGTCA
CGCCGATGGTCAGCGAGCGCATTTTCGAGAAGTGGTTCTCCCTGCCGAACATCATCCTGCTGGCGCCGATTCCGCTGCTG
ACAATGGTGCTGTTCGTGGTCATCGAGCGACTGCTGCGCCGGATGCGTGACCTGCACGCGAACGGCAACGACCGCTGGTG
CTGGGTGCCGTTCGTGGGCACCGCCGTGATCTTCCTGCTGGCGTTCAACGGCCTGGCCTACAGCCTGTTCCCGTACCTCG
TGGTCGATCGCATCGACATCTGGCAGGCGGCCAGCGCGCCGGAATCGCTGATGGTGATCCTGATCGGCGCGGTGATCGTG
CTGCCCACGATCCTGGGTTACACGGCCTACGCGTACCGTGTATTCTGGGGCAAGGCCACGGACCTGCGTTACGACTGA

Upstream 100 bases:

>100_bases
TCGCCTATATCTCGGTGGTATTCCACTTGGCGCGCAAGGCCGGCAAGTCAAAGGACGATTCCTCCCAATCCGTTATCCCA
GGTCAGCTCAGGAGCGCGCA

Downstream 100 bases:

>100_bases
CCCCATCGAACCCGTGGCTTTCTGGCGTCGAGGAGGCGCCCATGCCGCAATGCCGCCAGGACTCCCCCGTTCGTCCGCCC
CGTCCACACCTTCCGCCGGC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MNPATMHDLSQPAGWMPLVFLALMGLSMLIYVILDGYDLGVGVLLRRADDVDKDTMIASIGPFWDANETWLVLGVGLLLT
AFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDPHKPWWNFAFYAGSLLASFSQGLMLGLYITGFRYDLPNLLF
AVAVGLCLVAGYCLLGASWLIMKTTGNLQLRAIYWARRSLWLTAIGVAAISIVTPMVSERIFEKWFSLPNIILLAPIPLL
TMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGTAVIFLLAFNGLAYSLFPYLVVDRIDIWQAASAPESLMVILIGAVIV
LPTILGYTAYAYRVFWGKATDLRYD

Sequences:

>Translated_345_residues
MNPATMHDLSQPAGWMPLVFLALMGLSMLIYVILDGYDLGVGVLLRRADDVDKDTMIASIGPFWDANETWLVLGVGLLLT
AFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDPHKPWWNFAFYAGSLLASFSQGLMLGLYITGFRYDLPNLLF
AVAVGLCLVAGYCLLGASWLIMKTTGNLQLRAIYWARRSLWLTAIGVAAISIVTPMVSERIFEKWFSLPNIILLAPIPLL
TMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGTAVIFLLAFNGLAYSLFPYLVVDRIDIWQAASAPESLMVILIGAVIV
LPTILGYTAYAYRVFWGKATDLRYD
>Mature_345_residues
MNPATMHDLSQPAGWMPLVFLALMGLSMLIYVILDGYDLGVGVLLRRADDVDKDTMIASIGPFWDANETWLVLGVGLLLT
AFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDPHKPWWNFAFYAGSLLASFSQGLMLGLYITGFRYDLPNLLF
AVAVGLCLVAGYCLLGASWLIMKTTGNLQLRAIYWARRSLWLTAIGVAAISIVTPMVSERIFEKWFSLPNIILLAPIPLL
TMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGTAVIFLLAFNGLAYSLFPYLVVDRIDIWQAASAPESLMVILIGAVIV
LPTILGYTAYAYRVFWGKATDLRYD

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=366, Percent_Identity=27.0491803278689, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1787213, Length=364, Percent_Identity=24.7252747252747, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38500; Mature: 38500

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPATMHDLSQPAGWMPLVFLALMGLSMLIYVILDGYDLGVGVLLRRADDVDKDTMIASI
CCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHEEEEC
GPFWDANETWLVLGVGLLLTAFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
HKPWWNFAFYAGSLLASFSQGLMLGLYITGFRYDLPNLLFAVAVGLCLVAGYCLLGASWL
CCCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
IMKTTGNLQLRAIYWARRSLWLTAIGVAAISIVTPMVSERIFEKWFSLPNIILLAPIPLL
EEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHH
TMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGTAVIFLLAFNGLAYSLFPYLVVDRIDI
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WQAASAPESLMVILIGAVIVLPTILGYTAYAYRVFWGKATDLRYD
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
>Mature Secondary Structure
MNPATMHDLSQPAGWMPLVFLALMGLSMLIYVILDGYDLGVGVLLRRADDVDKDTMIASI
CCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHEEEEC
GPFWDANETWLVLGVGLLLTAFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
HKPWWNFAFYAGSLLASFSQGLMLGLYITGFRYDLPNLLFAVAVGLCLVAGYCLLGASWL
CCCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
IMKTTGNLQLRAIYWARRSLWLTAIGVAAISIVTPMVSERIFEKWFSLPNIILLAPIPLL
EEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHH
TMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGTAVIFLLAFNGLAYSLFPYLVVDRIDI
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WQAASAPESLMVILIGAVIVLPTILGYTAYAYRVFWGKATDLRYD
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]