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The map label for this gene is ycdI [C]

Identifier: 94314123

GI number: 94314123

Start: 1898451

End: 1899044

Strand: Direct

Name: ycdI [C]

Synonym: Rmet_5204

Alternate gene names: 94314123

Gene position: 1898451-1899044 (Clockwise)

Preceding gene: 94314122

Following gene: 94314124

Centisome position: 73.58

GC content: 67.34

Gene sequence:

>594_bases
ATGAGTGCGCCAGTCGCATCCGATGTGCTCGACACCCTGTTCCTGACGGCCCGCAGCCACAACGGCTGGCTCGACGGGGA
CGTCTCCGACGCCACATTGACCCGGCTCTATGCACTCGTCAGCCAGGGGCCGACCAGCGCCAACTGCAGCCCGATGCGCC
TGGTCTTCGTGCGCTCCGACGCCGCCAGGGCAAGGCTCCTGCCTACCCTCGCGCCAGCGAATGTCGACAAGGTCAGGCAC
GCCCCAGTCACCGCCATCGTGGCCTACGACACGGCGTTCCACGCGTTCGGCGAAACCTTGTTCCCGCACCGTCCCGCCAT
GTTCGACACGTTCGCAGCGGACCCCGCACTGGCTGCGGAAACGGCGATGCGCAACGGCTCGATGCAGGGCGGCTACCTGA
TTCTGGCGGCGCGCGCGCTCGGCCTGGACTGCGGCCCGCTCTCCGGCTTCAATGCGGACGCGGTGAACCGCGCCTTCTTT
CCCGACGGGCGCTGGCGTGTCAACTTCCTGTGCAACCTTGGCAAGGGAGACCCGGCGCGACTGTTCGCAAAGCTGCCGCG
ATTACCCTTCGATCAGGCCTGCCGCATCGAGTAG

Upstream 100 bases:

>100_bases
CTGTGGCCGCGCTGCCGCACCCTGACATGCGCGTGGAGATCACCGCGACGGCCTGGGGGCCGGACACGCCGGACAGCCCA
AGCAACGCACGGGGTGCCGC

Downstream 100 bases:

>100_bases
CACTGCCGGCCGCAACCCATCACAATATCCCCCTGCGCACAGAGCCAGAAGGCCGGTGCAGGAGAACTGGAGGAGACCAT
GAACATTTCCCAGCTGCGCG

Product: malonic semialdehyde reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSAPVASDVLDTLFLTARSHNGWLDGDVSDATLTRLYALVSQGPTSANCSPMRLVFVRSDAARARLLPTLAPANVDKVRH
APVTAIVAYDTAFHAFGETLFPHRPAMFDTFAADPALAAETAMRNGSMQGGYLILAARALGLDCGPLSGFNADAVNRAFF
PDGRWRVNFLCNLGKGDPARLFAKLPRLPFDQACRIE

Sequences:

>Translated_197_residues
MSAPVASDVLDTLFLTARSHNGWLDGDVSDATLTRLYALVSQGPTSANCSPMRLVFVRSDAARARLLPTLAPANVDKVRH
APVTAIVAYDTAFHAFGETLFPHRPAMFDTFAADPALAAETAMRNGSMQGGYLILAARALGLDCGPLSGFNADAVNRAFF
PDGRWRVNFLCNLGKGDPARLFAKLPRLPFDQACRIE
>Mature_196_residues
SAPVASDVLDTLFLTARSHNGWLDGDVSDATLTRLYALVSQGPTSANCSPMRLVFVRSDAARARLLPTLAPANVDKVRHA
PVTAIVAYDTAFHAFGETLFPHRPAMFDTFAADPALAAETAMRNGSMQGGYLILAARALGLDCGPLSGFNADAVNRAFFP
DGRWRVNFLCNLGKGDPARLFAKLPRLPFDQACRIE

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family. HadB/RutE subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787243, Length=194, Percent_Identity=51.5463917525773, Blast_Score=197, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 21195; Mature: 21064

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPVASDVLDTLFLTARSHNGWLDGDVSDATLTRLYALVSQGPTSANCSPMRLVFVRSD
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECC
AARARLLPTLAPANVDKVRHAPVTAIVAYDTAFHAFGETLFPHRPAMFDTFAADPALAAE
CHHHHHCCCCCCCCHHHHCCCCEEEEEEEHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHH
TAMRNGSMQGGYLILAARALGLDCGPLSGFNADAVNRAFFPDGRWRVNFLCNLGKGDPAR
HHHHCCCCCCCEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCHHH
LFAKLPRLPFDQACRIE
HHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SAPVASDVLDTLFLTARSHNGWLDGDVSDATLTRLYALVSQGPTSANCSPMRLVFVRSD
CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECC
AARARLLPTLAPANVDKVRHAPVTAIVAYDTAFHAFGETLFPHRPAMFDTFAADPALAAE
CHHHHHCCCCCCCCHHHHCCCCEEEEEEEHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHH
TAMRNGSMQGGYLILAARALGLDCGPLSGFNADAVNRAFFPDGRWRVNFLCNLGKGDPAR
HHHHCCCCCCCEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCHHH
LFAKLPRLPFDQACRIE
HHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]