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The map label for this gene is dapA [H]

Identifier: 94314016

GI number: 94314016

Start: 1788447

End: 1789391

Strand: Reverse

Name: dapA [H]

Synonym: Rmet_5097

Alternate gene names: 94314016

Gene position: 1789391-1788447 (Counterclockwise)

Preceding gene: 94314018

Following gene: 94314015

Centisome position: 69.35

GC content: 64.02

Gene sequence:

>945_bases
ATGTCTTCCAAGATTTTTGAGGGTACTATCCCCGCACTCATGACCCCTTGCACTCCGGATCGCAAGCCGGACTTCGACGC
GCTCGTCGCCAAGGGCAAGGAACTGATCGAACTCGGCATGAGCGCGGTCGTCTACTGCGGGTCGATGGGAGATTGGCCGC
TGCTGACGGAGCAACAACGCCAGGAAGGCGTGGCCCGCCTCGTGGCAGCGGGCGTGCCGACCATCGTCGGCACCGGCGCC
GTCAATTCGAAGGAAGCCGTTTCCCACGCCGCGCACGCCGCGAAGGTTGGCGCGCACGGCCTGATGGTTATTCCGCGCGT
GCTGTCGCGTGGCGCGTCCCCGGCCGCGCAGAAGGCGCATTTCTCCGCCATCCTTGCTGCCGCGCCGAGCCTGCCCGCGG
TGATCTACAACAGCCCGTACTATGGCTTCGCCACCCGGGGGGACCTGTTCTTCGAACTCCGCCGCCAGTTCCCGAACCTG
ATTGGCTTCAAGGAGTTTGGCGGCGCGGCGGACATGCGCTATGCCGCGGAGAACATCACCTCGCAGGACGAGAACGTGAT
CCTGATGGCCGGTGTCGACACGCAAGTGTTCCACGGGTTTGTGAACTGCGGCGCCACCGGTGCCATCACCGGTATCGGCA
ACGCGCTGCCGCGTGAAGTGCTGCAACTGGTCAAGCTGAGCAAGCAGGCGGCTGCTGGCGACGTCAAGGCGCGTCGCCTG
GCCAGGGAGCTGGAGGCGGCGCTGCATGTCCTGTCCTCGTTCGACGAAGGCACTGATCTGGTCCTGTTCTACAAGCACCT
GATGGTCCTGAACGGCGACAAGGAATACACGCTGCATTTCAACGAGACGGACGCGCTGAGCGATGCGCAGCGCAACTACG
CGGAACAGCAGTACGCACTCTTCCGCGACTGGTATCGCGAGTGGTCCAAAGGCGTGGACGCCTGA

Upstream 100 bases:

>100_bases
CGAAGCAGGGATCGTCATCCTGACAAGGCAGTCTCCCGGAGGCTGTTTCCGGGAGCCCCGATTCCGCTCTTATCGAAACT
TTCTGACTCAGGACCGCGTG

Downstream 100 bases:

>100_bases
TCCTGTCTGACCCTGCATGACCATCCCAAGGCGGCGAAGTCGGCTGCCTTGGGCGCATGTTCTACCCATCTGTACTCCTT
CTCCGCGATGCAGAGCTTTC

Product: dihydrodipicolinate synthetase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSSKIFEGTIPALMTPCTPDRKPDFDALVAKGKELIELGMSAVVYCGSMGDWPLLTEQQRQEGVARLVAAGVPTIVGTGA
VNSKEAVSHAAHAAKVGAHGLMVIPRVLSRGASPAAQKAHFSAILAAAPSLPAVIYNSPYYGFATRGDLFFELRRQFPNL
IGFKEFGGAADMRYAAENITSQDENVILMAGVDTQVFHGFVNCGATGAITGIGNALPREVLQLVKLSKQAAAGDVKARRL
ARELEAALHVLSSFDEGTDLVLFYKHLMVLNGDKEYTLHFNETDALSDAQRNYAEQQYALFRDWYREWSKGVDA

Sequences:

>Translated_314_residues
MSSKIFEGTIPALMTPCTPDRKPDFDALVAKGKELIELGMSAVVYCGSMGDWPLLTEQQRQEGVARLVAAGVPTIVGTGA
VNSKEAVSHAAHAAKVGAHGLMVIPRVLSRGASPAAQKAHFSAILAAAPSLPAVIYNSPYYGFATRGDLFFELRRQFPNL
IGFKEFGGAADMRYAAENITSQDENVILMAGVDTQVFHGFVNCGATGAITGIGNALPREVLQLVKLSKQAAAGDVKARRL
ARELEAALHVLSSFDEGTDLVLFYKHLMVLNGDKEYTLHFNETDALSDAQRNYAEQQYALFRDWYREWSKGVDA
>Mature_313_residues
SSKIFEGTIPALMTPCTPDRKPDFDALVAKGKELIELGMSAVVYCGSMGDWPLLTEQQRQEGVARLVAAGVPTIVGTGAV
NSKEAVSHAAHAAKVGAHGLMVIPRVLSRGASPAAQKAHFSAILAAAPSLPAVIYNSPYYGFATRGDLFFELRRQFPNLI
GFKEFGGAADMRYAAENITSQDENVILMAGVDTQVFHGFVNCGATGAITGIGNALPREVLQLVKLSKQAAAGDVKARRLA
RELEAALHVLSSFDEGTDLVLFYKHLMVLNGDKEYTLHFNETDALSDAQRNYAEQQYALFRDWYREWSKGVDA

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI31543060, Length=225, Percent_Identity=28, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1786463, Length=276, Percent_Identity=27.536231884058, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788823, Length=255, Percent_Identity=28.6274509803922, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87082415, Length=220, Percent_Identity=25.9090909090909, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 33968; Mature: 33837

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKIFEGTIPALMTPCTPDRKPDFDALVAKGKELIELGMSAVVYCGSMGDWPLLTEQQR
CCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
QEGVARLVAAGVPTIVGTGAVNSKEAVSHAAHAAKVGAHGLMVIPRVLSRGASPAAQKAH
HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHH
FSAILAAAPSLPAVIYNSPYYGFATRGDLFFELRRQFPNLIGFKEFGGAADMRYAAENIT
HHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCHHCCHHHHCCCHHHHHHHHHCC
SQDENVILMAGVDTQVFHGFVNCGATGAITGIGNALPREVLQLVKLSKQAAAGDVKARRL
CCCCCEEEEECCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARELEAALHVLSSFDEGTDLVLFYKHLMVLNGDKEYTLHFNETDALSDAQRNYAEQQYAL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
FRDWYREWSKGVDA
HHHHHHHHHCCCCC
>Mature Secondary Structure 
SSKIFEGTIPALMTPCTPDRKPDFDALVAKGKELIELGMSAVVYCGSMGDWPLLTEQQR
CCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
QEGVARLVAAGVPTIVGTGAVNSKEAVSHAAHAAKVGAHGLMVIPRVLSRGASPAAQKAH
HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHH
FSAILAAAPSLPAVIYNSPYYGFATRGDLFFELRRQFPNLIGFKEFGGAADMRYAAENIT
HHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCHHCCHHHHCCCHHHHHHHHHCC
SQDENVILMAGVDTQVFHGFVNCGATGAITGIGNALPREVLQLVKLSKQAAAGDVKARRL
CCCCCEEEEECCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARELEAALHVLSSFDEGTDLVLFYKHLMVLNGDKEYTLHFNETDALSDAQRNYAEQQYAL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
FRDWYREWSKGVDA
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA