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The map label for this gene is dppA [C]

Identifier: 94314007

GI number: 94314007

Start: 1777572

End: 1779155

Strand: Direct

Name: dppA [C]

Synonym: Rmet_5088

Alternate gene names: 94314007

Gene position: 1777572-1779155 (Clockwise)

Preceding gene: 94314006

Following gene: 94314008

Centisome position: 68.9

GC content: 66.22

Gene sequence:

>1584_bases
ATGCAACACCGACCGCTCGCCACTCTCGTCATGGGTGCCCTGTTGCTGGCCGGCACCAGCCTGCCGGCGCAGGCGCAGGC
ACCCGCCAGGACGCTGAAGATCGTGCCGCACGCCGACCTGAAGATCCTCGACCCGACCTTCACCACGGCCTACATCACGC
GCAACTTCGGCTATATGGTCTATGACACGCTGTTCGCGCAGGACGCGACCGGCAAGCCGCAACCGCAGATGGTGGAGAAG
TACACCAGCAGCAAGGACGGCAAACAGTGGAGCTTCACGCTGCGTCCCGGCCTGAAGTTCTCCGATGGCAACGCCGTGAC
CGCCGCGGACGCAGTGGCATCGTTGCAGCGCTGGGGCGCGCGCGACAGCCTGGGACGCTCGATGGGCGAGGCCGGCGCCG
AGTGGAAGGTCGTCGACGCACGCACCTTCACGCTGACGCTACAGCAGCCCTTTGGGCTGGTGCTGGAAGCGCTGGCCAAG
CCCTCCGGCTTTCCACCGGTGATCCTGCCCGAACGCCTGGCCAAGCAACCGGCCACCGCGCCGCTGAACGAAGTGGTGGG
TTCCGGTCCCTATCTGTTCAAGCGCGACGAATGGGTGCCGGGCAACAAGGCCGTGTTCGTGCGCAACCCCAACTACACGG
GCCGCCGCGAAGCACCAAGCGGTCTGGCCGGCAACAAGACCAGCCACTTCGATCGCATCGAATGGCTGTACCTCCCCGAC
GCCAACAGCGCGGTCGCCGCCCTCAAGCGCGGCGAGGTGGACCTGATCGAGCAGTTGCCACCGGACTACATCACGCCGCT
GCGTTCCGACAACAGCCTCAAGGTCGGCTCTGGCGGCACCTACCAGGGAATGCTGGTGATGAACCAGTTGCACCCGCCCT
TCAACAATCCGAAGGTACGCCAGGCCCTGCTGCAGGCGGTCAGCCAGGAGCGCTTCACCGCGGCCATGGGCTTCCCGCTG
GACATGCGCATGAACTACTGCGCCACGTACTTCATTTGCGGCAGCCCCAACGACACGGCCGCCGGCGCCGAACCCTTCCG
CAAACCGGACGTCGCCAAGGCCAAGCAGATGCTTGCGGCCTCGGGCTACAAGGGTGAAAAGGTGGTGTTGCTGGTGCCCA
CCGACATCACCGCGCTGAACGCCGAGGCGCTGATGGCCGCGCAGACCATGCGCAGCATCGGCATCAACGTCGACATGCAG
AACATGGACTGGGCCTCGATCGGCGCGCGACGTGCCAAGCGTGACGCGCCGGATGCCGGTGGCTGGAACATGTATGTGAC
CGTGGCAGGCGAGTTCGACGTCAACACCCCGGTTACCAATGCCTACCTCAGCGCCGCCTGCGGCAACAGCCTGCCGGGCT
GGCCGTGCGACAAGCCGCTGGATGAATTGCGCAGCGCGTGGGTGCGCGAGATGGTGCCGGCCAAGCGGCGCGATCTGCTC
GATGCCTTCCAGAAGCGCGCCTATGAAGCGGTGCCGTACGTGAACACCGGGCAGTACTCGTCCGCGTTCGCCGCGCGGGC
CAACCTGAAGGGCCTGGACAAGCTGTGGGGCGGCGTACCCACGGTCTGGGCGCTTGACCGCTGA

Upstream 100 bases:

>100_bases
AGTGGCCCCTCGATCCCGCCTGATTCGCGGGACGCAGAGACTCCAATACCAAGACACCTGACAAGCATCAGGACAAAGCA
AGACAAGGAGGAGACAAGAC

Downstream 100 bases:

>100_bases
GCGAGCCTGCCATGGGTTACCTGATCCGCCGCCTGCTGGCCACGCTGCCGGTGATGGCCGTGGTGGCCATCGTGGTCTTC
CTGCTGATCCACCTGTCGCC

Product: putative oligopeptide/dipeptide ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MQHRPLATLVMGALLLAGTSLPAQAQAPARTLKIVPHADLKILDPTFTTAYITRNFGYMVYDTLFAQDATGKPQPQMVEK
YTSSKDGKQWSFTLRPGLKFSDGNAVTAADAVASLQRWGARDSLGRSMGEAGAEWKVVDARTFTLTLQQPFGLVLEALAK
PSGFPPVILPERLAKQPATAPLNEVVGSGPYLFKRDEWVPGNKAVFVRNPNYTGRREAPSGLAGNKTSHFDRIEWLYLPD
ANSAVAALKRGEVDLIEQLPPDYITPLRSDNSLKVGSGGTYQGMLVMNQLHPPFNNPKVRQALLQAVSQERFTAAMGFPL
DMRMNYCATYFICGSPNDTAAGAEPFRKPDVAKAKQMLAASGYKGEKVVLLVPTDITALNAEALMAAQTMRSIGINVDMQ
NMDWASIGARRAKRDAPDAGGWNMYVTVAGEFDVNTPVTNAYLSAACGNSLPGWPCDKPLDELRSAWVREMVPAKRRDLL
DAFQKRAYEAVPYVNTGQYSSAFAARANLKGLDKLWGGVPTVWALDR

Sequences:

>Translated_527_residues
MQHRPLATLVMGALLLAGTSLPAQAQAPARTLKIVPHADLKILDPTFTTAYITRNFGYMVYDTLFAQDATGKPQPQMVEK
YTSSKDGKQWSFTLRPGLKFSDGNAVTAADAVASLQRWGARDSLGRSMGEAGAEWKVVDARTFTLTLQQPFGLVLEALAK
PSGFPPVILPERLAKQPATAPLNEVVGSGPYLFKRDEWVPGNKAVFVRNPNYTGRREAPSGLAGNKTSHFDRIEWLYLPD
ANSAVAALKRGEVDLIEQLPPDYITPLRSDNSLKVGSGGTYQGMLVMNQLHPPFNNPKVRQALLQAVSQERFTAAMGFPL
DMRMNYCATYFICGSPNDTAAGAEPFRKPDVAKAKQMLAASGYKGEKVVLLVPTDITALNAEALMAAQTMRSIGINVDMQ
NMDWASIGARRAKRDAPDAGGWNMYVTVAGEFDVNTPVTNAYLSAACGNSLPGWPCDKPLDELRSAWVREMVPAKRRDLL
DAFQKRAYEAVPYVNTGQYSSAFAARANLKGLDKLWGGVPTVWALDR
>Mature_527_residues
MQHRPLATLVMGALLLAGTSLPAQAQAPARTLKIVPHADLKILDPTFTTAYITRNFGYMVYDTLFAQDATGKPQPQMVEK
YTSSKDGKQWSFTLRPGLKFSDGNAVTAADAVASLQRWGARDSLGRSMGEAGAEWKVVDARTFTLTLQQPFGLVLEALAK
PSGFPPVILPERLAKQPATAPLNEVVGSGPYLFKRDEWVPGNKAVFVRNPNYTGRREAPSGLAGNKTSHFDRIEWLYLPD
ANSAVAALKRGEVDLIEQLPPDYITPLRSDNSLKVGSGGTYQGMLVMNQLHPPFNNPKVRQALLQAVSQERFTAAMGFPL
DMRMNYCATYFICGSPNDTAAGAEPFRKPDVAKAKQMLAASGYKGEKVVLLVPTDITALNAEALMAAQTMRSIGINVDMQ
NMDWASIGARRAKRDAPDAGGWNMYVTVAGEFDVNTPVTNAYLSAACGNSLPGWPCDKPLDELRSAWVREMVPAKRRDLL
DAFQKRAYEAVPYVNTGQYSSAFAARANLKGLDKLWGGVPTVWALDR

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=297, Percent_Identity=29.2929292929293, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1787762, Length=302, Percent_Identity=29.1390728476821, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1789397, Length=469, Percent_Identity=24.5202558635394, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789887, Length=424, Percent_Identity=25.7075471698113, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57479; Mature: 57479

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHRPLATLVMGALLLAGTSLPAQAQAPARTLKIVPHADLKILDPTFTTAYITRNFGYMV
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEECCCCEEEEEECCCCEEE
YDTLFAQDATGKPQPQMVEKYTSSKDGKQWSFTLRPGLKFSDGNAVTAADAVASLQRWGA
HHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCEECCCCEEHHHHHHHHHHHCCC
RDSLGRSMGEAGAEWKVVDARTFTLTLQQPFGLVLEALAKPSGFPPVILPERLAKQPATA
HHHHHHHHHHCCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
PLNEVVGSGPYLFKRDEWVPGNKAVFVRNPNYTGRREAPSGLAGNKTSHFDRIEWLYLPD
CHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
ANSAVAALKRGEVDLIEQLPPDYITPLRSDNSLKVGSGGTYQGMLVMNQLHPPFNNPKVR
CCHHHHHHHCCCHHHHHHCCCHHHCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCHHHH
QALLQAVSQERFTAAMGFPLDMRMNYCATYFICGSPNDTAAGAEPFRKPDVAKAKQMLAA
HHHHHHHHHHHHHHHCCCCHHHEECEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
SGYKGEKVVLLVPTDITALNAEALMAAQTMRSIGINVDMQNMDWASIGARRAKRDAPDAG
CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCC
GWNMYVTVAGEFDVNTPVTNAYLSAACGNSLPGWPCDKPLDELRSAWVREMVPAKRRDLL
CCEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
DAFQKRAYEAVPYVNTGQYSSAFAARANLKGLDKLWGGVPTVWALDR
HHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHCCCCCEEECCC
>Mature Secondary Structure
MQHRPLATLVMGALLLAGTSLPAQAQAPARTLKIVPHADLKILDPTFTTAYITRNFGYMV
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEECCCCEEEEEECCCCEEE
YDTLFAQDATGKPQPQMVEKYTSSKDGKQWSFTLRPGLKFSDGNAVTAADAVASLQRWGA
HHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCEECCCCEEHHHHHHHHHHHCCC
RDSLGRSMGEAGAEWKVVDARTFTLTLQQPFGLVLEALAKPSGFPPVILPERLAKQPATA
HHHHHHHHHHCCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
PLNEVVGSGPYLFKRDEWVPGNKAVFVRNPNYTGRREAPSGLAGNKTSHFDRIEWLYLPD
CHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
ANSAVAALKRGEVDLIEQLPPDYITPLRSDNSLKVGSGGTYQGMLVMNQLHPPFNNPKVR
CCHHHHHHHCCCHHHHHHCCCHHHCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCHHHH
QALLQAVSQERFTAAMGFPLDMRMNYCATYFICGSPNDTAAGAEPFRKPDVAKAKQMLAA
HHHHHHHHHHHHHHHCCCCHHHEECEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
SGYKGEKVVLLVPTDITALNAEALMAAQTMRSIGINVDMQNMDWASIGARRAKRDAPDAG
CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCC
GWNMYVTVAGEFDVNTPVTNAYLSAACGNSLPGWPCDKPLDELRSAWVREMVPAKRRDLL
CCEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
DAFQKRAYEAVPYVNTGQYSSAFAARANLKGLDKLWGGVPTVWALDR
HHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]