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The map label for this gene is dppB [C]

Identifier: 94314008

GI number: 94314008

Start: 1779167

End: 1780102

Strand: Direct

Name: dppB [C]

Synonym: Rmet_5089

Alternate gene names: 94314008

Gene position: 1779167-1780102 (Clockwise)

Preceding gene: 94314007

Following gene: 94314009

Centisome position: 68.96

GC content: 67.2

Gene sequence:

>936_bases
ATGGGTTACCTGATCCGCCGCCTGCTGGCCACGCTGCCGGTGATGGCCGTGGTGGCCATCGTGGTCTTCCTGCTGATCCA
CCTGTCGCCGGGCGACCCGGCGGCACTGATCGCGGGCGACCTTGCCACTGTCGAGGACATCGCGCGCCTGCGTGCCACGC
TTGGCCTCGACCAGCCGCTGTGGCAACAGTTCGGGCTCTGGGCCGGACGGCTCGCCAGCGGAGACCTGGGCACCTCCATC
TTCACGCAGATGCCGGTGACCGAGCTGCTGGCCCAGCGGCTGGAGCCGACGCTGTCAATCGCCGCGCTGACCATGCTGCT
GACGCTGCTGGTATCGGTGCCGCTGGGCACGCTGGCGGCCTATCGCGCGGGTAGCTGGATCGACCGGCTGGTGATGCTGT
TCGCCGTGCTGGCGTTCTCGCTCCCGGTATTCCTTGTGGGCTACCTGCTGGTCTATGCGTTCGCGATCCAGTTGCCGTGG
TTTCCGGTGCAGGGCTATGCCCGGCTGGCCGATGGCGCCGGGGGCTGGCTACGTAGCCTGGTGCTGCCGTGCGTCAACCT
GGCGTTGGTGTACATCGCCCTGATCACCCGCATGACGCGCGCCACGGTGCTGGAAGTGCTGCACGAAGACTACATCCGCA
CCGCCCGCGCCAAGGGGCTCGGTGTGCTGCCGGTGCTCGGCCATGCGCTGCGCAACGCGGCCATCCCGATTGCGACCACG
GTCGGCACCGGCATCGCGCTGCTGATCGGCGGCGTGGTGGTGACCGAGACCGTGTTCGCGATTCCAGGCGTCGGCCGGCT
GGTGGTGGATTCGGTGCAACGCCACGACTACCCGGTCATCCAGAGCGTGCTGCTGCTCTCGGCAGGTGCCTATGTGCTGA
TCAACCTGATGATCGACCTCAGCTACCGGCTGTTCGATCCCCGCATCAAATACTGA

Upstream 100 bases:

>100_bases
ACTCGTCCGCGTTCGCCGCGCGGGCCAACCTGAAGGGCCTGGACAAGCTGTGGGGCGGCGTACCCACGGTCTGGGCGCTT
GACCGCTGAGCGAGCCTGCC

Downstream 100 bases:

>100_bases
GCCGCCATGACCGCTACCCTGCCCTCGCGCCAGGACGCCGCCGCACGGCCGGCGGACGACGACGCGCCGTTCGTGCTGCC
CCGCTGGTACTGGGCGCGCA

Product: ABC-type dipeptide transport system, membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MGYLIRRLLATLPVMAVVAIVVFLLIHLSPGDPAALIAGDLATVEDIARLRATLGLDQPLWQQFGLWAGRLASGDLGTSI
FTQMPVTELLAQRLEPTLSIAALTMLLTLLVSVPLGTLAAYRAGSWIDRLVMLFAVLAFSLPVFLVGYLLVYAFAIQLPW
FPVQGYARLADGAGGWLRSLVLPCVNLALVYIALITRMTRATVLEVLHEDYIRTARAKGLGVLPVLGHALRNAAIPIATT
VGTGIALLIGGVVVTETVFAIPGVGRLVVDSVQRHDYPVIQSVLLLSAGAYVLINLMIDLSYRLFDPRIKY

Sequences:

>Translated_311_residues
MGYLIRRLLATLPVMAVVAIVVFLLIHLSPGDPAALIAGDLATVEDIARLRATLGLDQPLWQQFGLWAGRLASGDLGTSI
FTQMPVTELLAQRLEPTLSIAALTMLLTLLVSVPLGTLAAYRAGSWIDRLVMLFAVLAFSLPVFLVGYLLVYAFAIQLPW
FPVQGYARLADGAGGWLRSLVLPCVNLALVYIALITRMTRATVLEVLHEDYIRTARAKGLGVLPVLGHALRNAAIPIATT
VGTGIALLIGGVVVTETVFAIPGVGRLVVDSVQRHDYPVIQSVLLLSAGAYVLINLMIDLSYRLFDPRIKY
>Mature_310_residues
GYLIRRLLATLPVMAVVAIVVFLLIHLSPGDPAALIAGDLATVEDIARLRATLGLDQPLWQQFGLWAGRLASGDLGTSIF
TQMPVTELLAQRLEPTLSIAALTMLLTLLVSVPLGTLAAYRAGSWIDRLVMLFAVLAFSLPVFLVGYLLVYAFAIQLPWF
PVQGYARLADGAGGWLRSLVLPCVNLALVYIALITRMTRATVLEVLHEDYIRTARAKGLGVLPVLGHALRNAAIPIATTV
GTGIALLIGGVVVTETVFAIPGVGRLVVDSVQRHDYPVIQSVLLLSAGAYVLINLMIDLSYRLFDPRIKY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=312, Percent_Identity=41.9871794871795, Blast_Score=243, Evalue=1e-65,
Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=36.6071428571429, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1789888, Length=312, Percent_Identity=38.7820512820513, Blast_Score=197, Evalue=6e-52,
Organism=Escherichia coli, GI1787497, Length=314, Percent_Identity=33.4394904458599, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=41.2121212121212, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=26.5193370165746, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=25.9124087591241, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33548; Mature: 33416

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYLIRRLLATLPVMAVVAIVVFLLIHLSPGDPAALIAGDLATVEDIARLRATLGLDQPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
WQQFGLWAGRLASGDLGTSIFTQMPVTELLAQRLEPTLSIAALTMLLTLLVSVPLGTLAA
HHHHCCHHHHCCCCCCCHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
YRAGSWIDRLVMLFAVLAFSLPVFLVGYLLVYAFAIQLPWFPVQGYARLADGAGGWLRSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHH
VLPCVNLALVYIALITRMTRATVLEVLHEDYIRTARAKGLGVLPVLGHALRNAAIPIATT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHH
VGTGIALLIGGVVVTETVFAIPGVGRLVVDSVQRHDYPVIQSVLLLSAGAYVLINLMIDL
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHH
SYRLFDPRIKY
HHHHCCCCCCC
>Mature Secondary Structure 
GYLIRRLLATLPVMAVVAIVVFLLIHLSPGDPAALIAGDLATVEDIARLRATLGLDQPL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH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HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]