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The map label for this gene is fimD [H]

Identifier: 94313881

GI number: 94313881

Start: 1626156

End: 1628759

Strand: Reverse

Name: fimD [H]

Synonym: Rmet_4959

Alternate gene names: 94313881

Gene position: 1628759-1626156 (Counterclockwise)

Preceding gene: 94313882

Following gene: 94313880

Centisome position: 63.13

GC content: 63.06

Gene sequence:

>2604_bases
ATGAAGCCGGTATCAAGAATCCCTCATTCGATCCCAAGTCGCCTGTGTCAGGTGAGCGCAGTCGTGCTCTCGATGTTCGC
GGGGGCGGTAGTCACGCCCGCCATGGCCACTTCCACGGACGCGCCGGTGGGCGTGACGATAGCCGCCGTGGAATTTAACG
ATACCTTTCTTCATAGCCCGGACGGGATGCGGCTGGATATCTCCCGATTCAATCAGGGCAACTTCGCGACCCCAGGCAGC
TACCGTGCCGACCTGTATGTCAATGATGCCTGGCTGGGCCGCGCCGAAGTCAACCTTCGCGCGATTGGGGATGACGCGCA
CAACGTGCAGCCTTGCTTCGATCACGACATGCTCGAACGTATGGGCGTCGATCTCGCCAAGCTGCCGCCAGAGGCAATCG
CGCGGCTCCAGGATGGGTCTGGCTGCGAACAGATTCCCGCGCTGATCCCCGCGGCCACCGCGACGTTCGATACTGGAGAG
CAACGTCTTGACGTGAGCATCCCGCAGCTCTATATGAGGCGTTCTGCGCGCGGTTATGTCGACCCGAAATACTGGGATAA
CGGTATTCCCGCCGCGCGGTTGCAGTACAACGCCAATGCCTACCATTCGGATAGCGCCGGGGTCTCGTACACGCAGGGCT
TCGTGGGGCTCGACGCAGGTTTGAACCTGGGACCATGGAGGTTCCACCACAACGGCAATCTGTCGTATAGCAGTGGCGGA
GGGCAGCCGGGCGCCACGCACTACCAGGCGGTGCAGACCAACCTGCAACGGTCGATTAATGAGATCAAGAGCCAGCTCAC
GCTGGGCGATGCCTTCACCGATGGCCGGATGTTCGACAGTTTCGGCTTTCGCGGTGTCCAGCTGGCGACCGATGACCGCA
TGTATCCGGACTCGCAACGCGGATACGCGCCGACGATCCATGGCATCGCCAACAGCAACGCGCGGGTACAGATTCGCCAG
AACGGCAACATCATTTACGAAACCACGGTCGCCCCGGGCGCGTTCGAGATCAACGATCTGTATCCAACCGGCTACGGCGG
CGACATCGACGTGGTGGTGACCGAAGCCGATGGGTCGCAGCATGTCTCCCGCGTGCCGTTCGCGCCGATGGCCAATGCGC
TGCGCCCGGGCGTAACGCGCTATGGCGTGACGGCCGGTCAGTTCCGCAATACCAGCATCTCAAGCAAGCCCGGCGTGTTC
CAGGCCACGATCCAACACGGCCTGTCGAACATGTTCACCGCCTACGGTGGCGCGCTGGTGTCCGAGGGCTACTGGTCCGC
GCTGGCGGGTCTGGCCATGAGCACGGACTTTGGCGCGATCGGCCTCGATGTCACGCAAGCGTCGACACACCTGACTTCGG
AGCCGGATCGTAGCGGGCAAAGCATCCGGCTGTCGTACAGCAAGCTGGTTGCCCCGACCAATACCAACCTGACGCTGGCG
GCCTATCGTTACTCGACGCGCGGCTATCTGGGCTTTTCCGACGCGGTGATACTGCGCGATCTCGATTCGCGCGGACTCGG
CTTTTCCGCGGTGGGCACGGTGCGTGGCCGGTTGCAGGTGATGCTCAATCAGATGCTTTCGGCGGGATACGGCAGCTTCT
ATCTGTCGGGATCGACCCAGGACTACTGGAACCGGGATGGCCGGGACACGCAGTTCCAGGCCGGTTACAGCAATATCTAC
AGGGGTGTCAGCTACGGGATTTCGGCGGCCAGGCAGCTCAGCCTCAATACCGGCAAGTGGGACAACCGCGTGATGCTGAC
GCTGACGCTGCCGCTCGGCAAGTCACCGTTCGCGCCGTACTCGACGACCAGCCTCCAGAAGGACTCGCAGGGGGCAACTA
CCTTGCAGGAGACCCTTTCCGGGACGCTCGGCGCCGATCATGCGCTGTCGTACTCGGTCTCCGCCAATCATGCCAGCGGT
GGCGACGCGCCTACCAACAACAGCGCCAGCCTCAATGCCTCCTACATATCGAGGATGGCGACGCTATCGGGCAACGTGAG
TAAGGGCACGAACTACACGCAGGCGGGCGTGGGCATCTCAGGCGGTGTGGTGGCTTACCAGGGCGGTGTCACGTTCGCCC
CGCGCTTCGGCGATACCGTCGCGGTCATCGAGGCCAAGGATGCGGTGGGCGCGCAGGTGCTCAACGATACGGGCCTGCGT
ATCGATCGATGGGGGCACGCGGTGGTCTCGAATCTGACCCCGTTCTCTCGCAACGAGATCAACCTCGATCCGAAGGGATT
ACCGCTGAACGTCGAACTGAAGTCGACCATGCAGAACGTTGCCCCGACAGCCGGCGCCGTGGTGAAGGTGCTGTTCGAAA
CCGATAACCCGGGTCGTGCCGTGGCGCTGCGCATCAAGCTACCAGACGGCAGCCCGTTGCCGTTCGGTGCGGAAGTGCTG
GACGACAATGGCCGGTCCTTCGGCACGGTGGCCCAGGGTGGATTGGCGATCCTACGTGGCGTGAAGGACGACAGCGGAAC
GTTGCTGGCCAAGTGGGGCGCGGGCCCGAAGGATTCGTGCTCGCTGTCCTATGCATTGCCCGGCGTCGACGCGGCTCCTG
CCGGGTTGGTACAGGCGGGTGCGGAGTGCCGGCCGAACCCGTGA

Upstream 100 bases:

>100_bases
CGCTGACAGCCGGCGTCCGAGGTTTCCTTTCAAGACAGTCCACCGATGCGGGCCGCGTGCTCCGCAGGGGCGGCCGTTTG
TCCAAATTCTCCGAGTGGCC

Downstream 100 bases:

>100_bases
TCGTCGCGGGCCAGGGGCATGGTGAATGGGGTGAGGAACGACGCCGGATAGTCGTGATGCGTCACAGCAGTGGCGCCGAG
GTCATGCCGGGCGTCGGTTC

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 867; Mature: 867

Protein sequence:

>867_residues
MKPVSRIPHSIPSRLCQVSAVVLSMFAGAVVTPAMATSTDAPVGVTIAAVEFNDTFLHSPDGMRLDISRFNQGNFATPGS
YRADLYVNDAWLGRAEVNLRAIGDDAHNVQPCFDHDMLERMGVDLAKLPPEAIARLQDGSGCEQIPALIPAATATFDTGE
QRLDVSIPQLYMRRSARGYVDPKYWDNGIPAARLQYNANAYHSDSAGVSYTQGFVGLDAGLNLGPWRFHHNGNLSYSSGG
GQPGATHYQAVQTNLQRSINEIKSQLTLGDAFTDGRMFDSFGFRGVQLATDDRMYPDSQRGYAPTIHGIANSNARVQIRQ
NGNIIYETTVAPGAFEINDLYPTGYGGDIDVVVTEADGSQHVSRVPFAPMANALRPGVTRYGVTAGQFRNTSISSKPGVF
QATIQHGLSNMFTAYGGALVSEGYWSALAGLAMSTDFGAIGLDVTQASTHLTSEPDRSGQSIRLSYSKLVAPTNTNLTLA
AYRYSTRGYLGFSDAVILRDLDSRGLGFSAVGTVRGRLQVMLNQMLSAGYGSFYLSGSTQDYWNRDGRDTQFQAGYSNIY
RGVSYGISAARQLSLNTGKWDNRVMLTLTLPLGKSPFAPYSTTSLQKDSQGATTLQETLSGTLGADHALSYSVSANHASG
GDAPTNNSASLNASYISRMATLSGNVSKGTNYTQAGVGISGGVVAYQGGVTFAPRFGDTVAVIEAKDAVGAQVLNDTGLR
IDRWGHAVVSNLTPFSRNEINLDPKGLPLNVELKSTMQNVAPTAGAVVKVLFETDNPGRAVALRIKLPDGSPLPFGAEVL
DDNGRSFGTVAQGGLAILRGVKDDSGTLLAKWGAGPKDSCSLSYALPGVDAAPAGLVQAGAECRPNP

Sequences:

>Translated_867_residues
MKPVSRIPHSIPSRLCQVSAVVLSMFAGAVVTPAMATSTDAPVGVTIAAVEFNDTFLHSPDGMRLDISRFNQGNFATPGS
YRADLYVNDAWLGRAEVNLRAIGDDAHNVQPCFDHDMLERMGVDLAKLPPEAIARLQDGSGCEQIPALIPAATATFDTGE
QRLDVSIPQLYMRRSARGYVDPKYWDNGIPAARLQYNANAYHSDSAGVSYTQGFVGLDAGLNLGPWRFHHNGNLSYSSGG
GQPGATHYQAVQTNLQRSINEIKSQLTLGDAFTDGRMFDSFGFRGVQLATDDRMYPDSQRGYAPTIHGIANSNARVQIRQ
NGNIIYETTVAPGAFEINDLYPTGYGGDIDVVVTEADGSQHVSRVPFAPMANALRPGVTRYGVTAGQFRNTSISSKPGVF
QATIQHGLSNMFTAYGGALVSEGYWSALAGLAMSTDFGAIGLDVTQASTHLTSEPDRSGQSIRLSYSKLVAPTNTNLTLA
AYRYSTRGYLGFSDAVILRDLDSRGLGFSAVGTVRGRLQVMLNQMLSAGYGSFYLSGSTQDYWNRDGRDTQFQAGYSNIY
RGVSYGISAARQLSLNTGKWDNRVMLTLTLPLGKSPFAPYSTTSLQKDSQGATTLQETLSGTLGADHALSYSVSANHASG
GDAPTNNSASLNASYISRMATLSGNVSKGTNYTQAGVGISGGVVAYQGGVTFAPRFGDTVAVIEAKDAVGAQVLNDTGLR
IDRWGHAVVSNLTPFSRNEINLDPKGLPLNVELKSTMQNVAPTAGAVVKVLFETDNPGRAVALRIKLPDGSPLPFGAEVL
DDNGRSFGTVAQGGLAILRGVKDDSGTLLAKWGAGPKDSCSLSYALPGVDAAPAGLVQAGAECRPNP
>Mature_867_residues
MKPVSRIPHSIPSRLCQVSAVVLSMFAGAVVTPAMATSTDAPVGVTIAAVEFNDTFLHSPDGMRLDISRFNQGNFATPGS
YRADLYVNDAWLGRAEVNLRAIGDDAHNVQPCFDHDMLERMGVDLAKLPPEAIARLQDGSGCEQIPALIPAATATFDTGE
QRLDVSIPQLYMRRSARGYVDPKYWDNGIPAARLQYNANAYHSDSAGVSYTQGFVGLDAGLNLGPWRFHHNGNLSYSSGG
GQPGATHYQAVQTNLQRSINEIKSQLTLGDAFTDGRMFDSFGFRGVQLATDDRMYPDSQRGYAPTIHGIANSNARVQIRQ
NGNIIYETTVAPGAFEINDLYPTGYGGDIDVVVTEADGSQHVSRVPFAPMANALRPGVTRYGVTAGQFRNTSISSKPGVF
QATIQHGLSNMFTAYGGALVSEGYWSALAGLAMSTDFGAIGLDVTQASTHLTSEPDRSGQSIRLSYSKLVAPTNTNLTLA
AYRYSTRGYLGFSDAVILRDLDSRGLGFSAVGTVRGRLQVMLNQMLSAGYGSFYLSGSTQDYWNRDGRDTQFQAGYSNIY
RGVSYGISAARQLSLNTGKWDNRVMLTLTLPLGKSPFAPYSTTSLQKDSQGATTLQETLSGTLGADHALSYSVSANHASG
GDAPTNNSASLNASYISRMATLSGNVSKGTNYTQAGVGISGGVVAYQGGVTFAPRFGDTVAVIEAKDAVGAQVLNDTGLR
IDRWGHAVVSNLTPFSRNEINLDPKGLPLNVELKSTMQNVAPTAGAVVKVLFETDNPGRAVALRIKLPDGSPLPFGAEVL
DDNGRSFGTVAQGGLAILRGVKDDSGTLLAKWGAGPKDSCSLSYALPGVDAAPAGLVQAGAECRPNP

Specific function: Involved in the export and assembly of the type 3 fimbrial subunit (mrkA) [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1786332, Length=842, Percent_Identity=35.8669833729216, Blast_Score=491, Evalue=1e-139,
Organism=Escherichia coli, GI1790772, Length=887, Percent_Identity=35.0620067643743, Blast_Score=473, Evalue=1e-134,
Organism=Escherichia coli, GI1789533, Length=811, Percent_Identity=35.2651048088779, Blast_Score=454, Evalue=1e-129,
Organism=Escherichia coli, GI1787172, Length=848, Percent_Identity=36.3207547169811, Blast_Score=453, Evalue=1e-128,
Organism=Escherichia coli, GI1786744, Length=840, Percent_Identity=34.8809523809524, Blast_Score=449, Evalue=1e-127,
Organism=Escherichia coli, GI1788427, Length=761, Percent_Identity=33.245729303548, Blast_Score=390, Evalue=1e-109,
Organism=Escherichia coli, GI87081778, Length=817, Percent_Identity=28.1517747858017, Blast_Score=228, Evalue=9e-61,
Organism=Escherichia coli, GI1789610, Length=846, Percent_Identity=24.5862884160757, Blast_Score=152, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 91985; Mature: 91985

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVSRIPHSIPSRLCQVSAVVLSMFAGAVVTPAMATSTDAPVGVTIAAVEFNDTFLHSP
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCEEECC
DGMRLDISRFNQGNFATPGSYRADLYVNDAWLGRAEVNLRAIGDDAHNVQPCFDHDMLER
CCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHH
MGVDLAKLPPEAIARLQDGSGCEQIPALIPAATATFDTGEQRLDVSIPQLYMRRSARGYV
HCCCHHHCCHHHHHHCCCCCCHHHHHHHHCCCCEECCCCCCEEECCHHHHHHHHCCCCCC
DPKYWDNGIPAARLQYNANAYHSDSAGVSYTQGFVGLDAGLNLGPWRFHHNGNLSYSSGG
CHHHCCCCCCCEEEEECCCCEECCCCCCEEECCEEEECCCCCCCCEEEECCCCEEECCCC
GQPGATHYQAVQTNLQRSINEIKSQLTLGDAFTDGRMFDSFGFRGVQLATDDRMYPDSQR
CCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEECCCCCCEEEEECCCCCCCCCCC
GYAPTIHGIANSNARVQIRQNGNIIYETTVAPGAFEINDLYPTGYGGDIDVVVTEADGSQ
CCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCCEEEEEECCCCCC
HVSRVPFAPMANALRPGVTRYGVTAGQFRNTSISSKPGVFQATIQHGLSNMFTAYGGALV
CHHCCCCHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHH
SEGYWSALAGLAMSTDFGAIGLDVTQASTHLTSEPDRSGQSIRLSYSKLVAPTNTNLTLA
CCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEHHHEECCCCCCEEEE
AYRYSTRGYLGFSDAVILRDLDSRGLGFSAVGTVRGRLQVMLNQMLSAGYGSFYLSGSTQ
EEEECCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCH
DYWNRDGRDTQFQAGYSNIYRGVSYGISAARQLSLNTGKWDNRVMLTLTLPLGKSPFAPY
HHHCCCCCCCEEECCHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEEECCCCCCCCCC
STTSLQKDSQGATTLQETLSGTLGADHALSYSVSANHASGGDAPTNNSASLNASYISRMA
CCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEECHHHHHHHH
TLSGNVSKGTNYTQAGVGISGGVVAYQGGVTFAPRFGDTVAVIEAKDAVGAQVLNDTGLR
HHCCCCCCCCCCEECCCCCCCCEEEEECCEEECCCCCCEEEEEEECCCCCHHHHCCCCCE
IDRWGHAVVSNLTPFSRNEINLDPKGLPLNVELKSTMQNVAPTAGAVVKVLFETDNPGRA
EECCCHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCEEEEEEEECCCCCCE
VALRIKLPDGSPLPFGAEVLDDNGRSFGTVAQGGLAILRGVKDDSGTLLAKWGAGPKDSC
EEEEEECCCCCCCCCCHHEECCCCCEECCHHCCCEEEEECCCCCCCCEEEECCCCCCCCC
SLSYALPGVDAAPAGLVQAGAECRPNP
EEEEECCCCCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MKPVSRIPHSIPSRLCQVSAVVLSMFAGAVVTPAMATSTDAPVGVTIAAVEFNDTFLHSP
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCEEECC
DGMRLDISRFNQGNFATPGSYRADLYVNDAWLGRAEVNLRAIGDDAHNVQPCFDHDMLER
CCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHH
MGVDLAKLPPEAIARLQDGSGCEQIPALIPAATATFDTGEQRLDVSIPQLYMRRSARGYV
HCCCHHHCCHHHHHHCCCCCCHHHHHHHHCCCCEECCCCCCEEECCHHHHHHHHCCCCCC
DPKYWDNGIPAARLQYNANAYHSDSAGVSYTQGFVGLDAGLNLGPWRFHHNGNLSYSSGG
CHHHCCCCCCCEEEEECCCCEECCCCCCEEECCEEEECCCCCCCCEEEECCCCEEECCCC
GQPGATHYQAVQTNLQRSINEIKSQLTLGDAFTDGRMFDSFGFRGVQLATDDRMYPDSQR
CCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEECCCCCCEEEEECCCCCCCCCCC
GYAPTIHGIANSNARVQIRQNGNIIYETTVAPGAFEINDLYPTGYGGDIDVVVTEADGSQ
CCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCCEEEEEECCCCCC
HVSRVPFAPMANALRPGVTRYGVTAGQFRNTSISSKPGVFQATIQHGLSNMFTAYGGALV
CHHCCCCHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHH
SEGYWSALAGLAMSTDFGAIGLDVTQASTHLTSEPDRSGQSIRLSYSKLVAPTNTNLTLA
CCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEHHHEECCCCCCEEEE
AYRYSTRGYLGFSDAVILRDLDSRGLGFSAVGTVRGRLQVMLNQMLSAGYGSFYLSGSTQ
EEEECCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCH
DYWNRDGRDTQFQAGYSNIYRGVSYGISAARQLSLNTGKWDNRVMLTLTLPLGKSPFAPY
HHHCCCCCCCEEECCHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEEECCCCCCCCCC
STTSLQKDSQGATTLQETLSGTLGADHALSYSVSANHASGGDAPTNNSASLNASYISRMA
CCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEECHHHHHHHH
TLSGNVSKGTNYTQAGVGISGGVVAYQGGVTFAPRFGDTVAVIEAKDAVGAQVLNDTGLR
HHCCCCCCCCCCEECCCCCCCCEEEEECCEEECCCCCCEEEEEEECCCCCHHHHCCCCCE
IDRWGHAVVSNLTPFSRNEINLDPKGLPLNVELKSTMQNVAPTAGAVVKVLFETDNPGRA
EECCCHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCEEEEEEEECCCCCCE
VALRIKLPDGSPLPFGAEVLDDNGRSFGTVAQGGLAILRGVKDDSGTLLAKWGAGPKDSC
EEEEEECCCCCCCCCCHHEECCCCCEECCHHCCCEEEEECCCCCCCCEEEECCCCCCCCC
SLSYALPGVDAAPAGLVQAGAECRPNP
EEEEECCCCCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1670938 [H]