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The map label for this gene is fimC [H]

Identifier: 94313882

GI number: 94313882

Start: 1628874

End: 1629578

Strand: Reverse

Name: fimC [H]

Synonym: Rmet_4960

Alternate gene names: 94313882

Gene position: 1629578-1628874 (Counterclockwise)

Preceding gene: 94313883

Following gene: 94313881

Centisome position: 63.16

GC content: 62.84

Gene sequence:

>705_bases
TTGGGCCTTACGGGTTCTGCAGCGCACGCCTCGGTGGTCCTGGGCGGCACGCGCGTCATACTCGACGAGAAAGACAAGGA
AGCCACGATCCGGGCATCCAATGAAGGCAATACGCCGGCATTGATCCAGACGTGGGTGGACAAGGGCGATCCGAAGGCTT
CGCCGACATCCATCGAAGTGCCATTTACGGTGATGCCTCCGGTGGCGCGTATCGATCCGAGCAAGGGGCAGACACTGCGC
GTGCTCTACACCGGCGAGCCACTGCCAACGGACAAGGAGTCCGTGTTCTGGCTGAACGTGCTGGAAATCCCCCCGAAAGC
CACGGGTGACCTAGCGGAAGCCAATCGTCTGCAACTTGCGTTCCGCACCCGCGTCAAGCTCTTCTACCGACCCACCGGCC
TGGTGGGCACCGCAGCGGAAGCTCCGTCGCGCGTGACCTGGCGCATCAAGCCTGCGGGCAAGACACTGGCGCTTGAAGCG
ACCAATCCGACGGGCTATCACGTCTCGTACGCCGGCATGGATGTGTCCGCGGGAGGCAAGACGGTTCGCAATCAGGAGGG
CGGCATGATCGGCCCCGGCGAAACGAAGACGTTTCCTCTCGATGGTGAAGCGGGTTTGGGTGCCAATGGCAGCGTGCACT
ATCGCGCGATCAATGACTGGGGTGGCCCGATAGAGGGCGATGCTCCGGTAGTCCCGGCCAGTTGA

Upstream 100 bases:

>100_bases
CTGTCAGGGGGCCATCCGGCTTCAGCACACCGAATTCGCATTAGCTGTCATGAAAACTAGGTCAACGATTCAATCCGCGT
TGGCCGCCGGGATGCTTGTA

Downstream 100 bases:

>100_bases
TCCATCAGCGCTGGCGCTGACAGCCGGCGTCCGAGGTTTCCTTTCAAGACAGTCCACCGATGCGGGCCGCGTGCTCCGCA
GGGGCGGCCGTTTGTCCAAA

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MGLTGSAAHASVVLGGTRVILDEKDKEATIRASNEGNTPALIQTWVDKGDPKASPTSIEVPFTVMPPVARIDPSKGQTLR
VLYTGEPLPTDKESVFWLNVLEIPPKATGDLAEANRLQLAFRTRVKLFYRPTGLVGTAAEAPSRVTWRIKPAGKTLALEA
TNPTGYHVSYAGMDVSAGGKTVRNQEGGMIGPGETKTFPLDGEAGLGANGSVHYRAINDWGGPIEGDAPVVPAS

Sequences:

>Translated_234_residues
MGLTGSAAHASVVLGGTRVILDEKDKEATIRASNEGNTPALIQTWVDKGDPKASPTSIEVPFTVMPPVARIDPSKGQTLR
VLYTGEPLPTDKESVFWLNVLEIPPKATGDLAEANRLQLAFRTRVKLFYRPTGLVGTAAEAPSRVTWRIKPAGKTLALEA
TNPTGYHVSYAGMDVSAGGKTVRNQEGGMIGPGETKTFPLDGEAGLGANGSVHYRAINDWGGPIEGDAPVVPAS
>Mature_233_residues
GLTGSAAHASVVLGGTRVILDEKDKEATIRASNEGNTPALIQTWVDKGDPKASPTSIEVPFTVMPPVARIDPSKGQTLRV
LYTGEPLPTDKESVFWLNVLEIPPKATGDLAEANRLQLAFRTRVKLFYRPTGLVGTAAEAPSRVTWRIKPAGKTLALEAT
NPTGYHVSYAGMDVSAGGKTVRNQEGGMIGPGETKTFPLDGEAGLGANGSVHYRAINDWGGPIEGDAPVVPAS

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=226, Percent_Identity=46.4601769911504, Blast_Score=206, Evalue=7e-55,
Organism=Escherichia coli, GI1789532, Length=220, Percent_Identity=38.6363636363636, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1788428, Length=217, Percent_Identity=34.1013824884793, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1787171, Length=210, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790771, Length=217, Percent_Identity=34.5622119815668, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786743, Length=224, Percent_Identity=32.5892857142857, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1788677, Length=168, Percent_Identity=35.7142857142857, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1786936, Length=231, Percent_Identity=27.7056277056277, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082203, Length=137, Percent_Identity=30.6569343065693, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081806, Length=223, Percent_Identity=30.0448430493274, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 24642; Mature: 24511

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLTGSAAHASVVLGGTRVILDEKDKEATIRASNEGNTPALIQTWVDKGDPKASPTSIEV
CCCCCCCCEEEEEECCEEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEE
PFTVMPPVARIDPSKGQTLRVLYTGEPLPTDKESVFWLNVLEIPPKATGDLAEANRLQLA
CEEECCCHHEECCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEE
FRTRVKLFYRPTGLVGTAAEAPSRVTWRIKPAGKTLALEATNPTGYHVSYAGMDVSAGGK
EEEEEEEEECCCCCEECCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECEEECCCCC
TVRNQEGGMIGPGETKTFPLDGEAGLGANGSVHYRAINDWGGPIEGDAPVVPAS
EEECCCCCEECCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GLTGSAAHASVVLGGTRVILDEKDKEATIRASNEGNTPALIQTWVDKGDPKASPTSIEV
CCCCCCCEEEEEECCEEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEE
PFTVMPPVARIDPSKGQTLRVLYTGEPLPTDKESVFWLNVLEIPPKATGDLAEANRLQLA
CEEECCCHHEECCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEE
FRTRVKLFYRPTGLVGTAAEAPSRVTWRIKPAGKTLALEATNPTGYHVSYAGMDVSAGGK
EEEEEEEEECCCCCEECCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECEEECCCCC
TVRNQEGGMIGPGETKTFPLDGEAGLGANGSVHYRAINDWGGPIEGDAPVVPAS
EEECCCCCEECCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]