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The map label for this gene is yhbU [H]

Identifier: 94313862

GI number: 94313862

Start: 1604923

End: 1605951

Strand: Reverse

Name: yhbU [H]

Synonym: Rmet_4940

Alternate gene names: 94313862

Gene position: 1605951-1604923 (Counterclockwise)

Preceding gene: 94313863

Following gene: 94313861

Centisome position: 62.24

GC content: 66.96

Gene sequence:

>1029_bases
ATGAATCCACCCTTGGCGGCGCCCGTGCGCCGCCCTCAACTTGTCGCACCCGCAGGCTCGCTAGCAGCGCTGCGCATGGC
GTTGCAGCACGGCGCCGACGCGGTGTATCTGGGCCTGCGCGATGCCACCAACGCGCGCAACTTCGGCGGTCTGAATTTCA
GCGAGGACGATATCCGCACCGGTGTGGCCGAGGCCCACGCATGCGGTGCCGAAGTGCTGTTCGCTATCAACACGTTCGCG
CAGATGGGCCACGTCGAGCAATGGCACCATGCCGTCGACGCGGCCGCCGCGCTCGGCGCGGATGCGGTCATCATGGCCGA
CCCCGGTCTGATTGCCTATGCCGCGAAACGCCATCCGTCCCTGCGCATCCACCTTTCCGTGCAGGGCTCCGCCACCCACG
CCGATGCAATCGAGCTGATGCGCGAGCAGTTCGGCATCCGGCGCGTCGTGTTGCCGCGAGTGCTCACGGTCACACAGATT
GCGAAGCTTGCCCGCCAGACCGATATCGAACTTGAAGTCTTTGGATTCGGCAGCCTCTGCGTGATGGCGGAGGGCCGGTG
CCTGCTGTCGTCCTACGCTACCGGCGACTCGCCTAATAACAAGGGCGTCTGCTCTCCGGCCCATGCGGTGCGCTGGGACG
AACAGGACGGCACGATGCAGGCGCGACTGTCCGGCATCCTGATCGACAGCTACGCCCCTGGCGAGCCGGCGGGCTATCCG
ACCCTCTGCAAGGGCCGATTCACGGTCGAAGGCGAGCGCGGCTACGTGCTGGAGGAACCCACCAGTCTCAATGCGGTATC
GCTGCTGCCCACTCTGATCGACATTGGCATCGCCGCGATCAAGATCGAAGGCCGGCAGCGCAGCCCGCGCTACGTCGCCG
ACGTGGTGGGTGTGCTGCGCGCGGCCATCGACGATGCATGCCGCGATCCGAAGCGCTTCGCGCCGCGCCAGGAATGGCAG
GCCACGCTGGGACGCCACGCCGAAGGCGACCAGGTCACGCAAGGCGCGTACGAGCGGCCCTGGCGCTGA

Upstream 100 bases:

>100_bases
GCAAACGCGGCGCGACGCTTTCGTTTCGTTTGCGCCGAGTCAAAGGCCCACCATCAGCGTATCGCTAGCATCCGGGAACT
CCCTTTCCGGACCCGATGCG

Downstream 100 bases:

>100_bases
GCGGCGTCCAACCATCACAAGCCAGGATTCCACATGGCAATGCCCACACAGCAATCTCCCTTGTTTCGAATTTCCCTCGG
CCCCTTGCTTTACTACTGGC

Product: protease; peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MNPPLAAPVRRPQLVAPAGSLAALRMALQHGADAVYLGLRDATNARNFGGLNFSEDDIRTGVAEAHACGAEVLFAINTFA
QMGHVEQWHHAVDAAAALGADAVIMADPGLIAYAAKRHPSLRIHLSVQGSATHADAIELMREQFGIRRVVLPRVLTVTQI
AKLARQTDIELEVFGFGSLCVMAEGRCLLSSYATGDSPNNKGVCSPAHAVRWDEQDGTMQARLSGILIDSYAPGEPAGYP
TLCKGRFTVEGERGYVLEEPTSLNAVSLLPTLIDIGIAAIKIEGRQRSPRYVADVVGVLRAAIDDACRDPKRFAPRQEWQ
ATLGRHAEGDQVTQGAYERPWR

Sequences:

>Translated_342_residues
MNPPLAAPVRRPQLVAPAGSLAALRMALQHGADAVYLGLRDATNARNFGGLNFSEDDIRTGVAEAHACGAEVLFAINTFA
QMGHVEQWHHAVDAAAALGADAVIMADPGLIAYAAKRHPSLRIHLSVQGSATHADAIELMREQFGIRRVVLPRVLTVTQI
AKLARQTDIELEVFGFGSLCVMAEGRCLLSSYATGDSPNNKGVCSPAHAVRWDEQDGTMQARLSGILIDSYAPGEPAGYP
TLCKGRFTVEGERGYVLEEPTSLNAVSLLPTLIDIGIAAIKIEGRQRSPRYVADVVGVLRAAIDDACRDPKRFAPRQEWQ
ATLGRHAEGDQVTQGAYERPWR
>Mature_342_residues
MNPPLAAPVRRPQLVAPAGSLAALRMALQHGADAVYLGLRDATNARNFGGLNFSEDDIRTGVAEAHACGAEVLFAINTFA
QMGHVEQWHHAVDAAAALGADAVIMADPGLIAYAAKRHPSLRIHLSVQGSATHADAIELMREQFGIRRVVLPRVLTVTQI
AKLARQTDIELEVFGFGSLCVMAEGRCLLSSYATGDSPNNKGVCSPAHAVRWDEQDGTMQARLSGILIDSYAPGEPAGYP
TLCKGRFTVEGERGYVLEEPTSLNAVSLLPTLIDIGIAAIKIEGRQRSPRYVADVVGVLRAAIDDACRDPKRFAPRQEWQ
ATLGRHAEGDQVTQGAYERPWR

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=330, Percent_Identity=53.9393939393939, Blast_Score=370, Evalue=1e-104,
Organism=Escherichia coli, GI1788397, Length=317, Percent_Identity=33.1230283911672, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI87081910, Length=303, Percent_Identity=27.7227722772277, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 36833; Mature: 36833

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPLAAPVRRPQLVAPAGSLAALRMALQHGADAVYLGLRDATNARNFGGLNFSEDDIRT
CCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHH
GVAEAHACGAEVLFAINTFAQMGHVEQWHHAVDAAAALGADAVIMADPGLIAYAAKRHPS
HHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCC
LRIHLSVQGSATHADAIELMREQFGIRRVVLPRVLTVTQIAKLARQTDIELEVFGFGSLC
EEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEE
VMAEGRCLLSSYATGDSPNNKGVCSPAHAVRWDEQDGTMQARLSGILIDSYAPGEPAGYP
EEECCCEEEECCCCCCCCCCCCCCCCHHHEEECCCCCCCEEHEEEEEEECCCCCCCCCCC
TLCKGRFTVEGERGYVLEEPTSLNAVSLLPTLIDIGIAAIKIEGRQRSPRYVADVVGVLR
CEECCEEEEECCCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
AAIDDACRDPKRFAPRQEWQATLGRHAEGDQVTQGAYERPWR
HHHHHHHCCHHHCCCHHHHHHHHCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MNPPLAAPVRRPQLVAPAGSLAALRMALQHGADAVYLGLRDATNARNFGGLNFSEDDIRT
CCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHH
GVAEAHACGAEVLFAINTFAQMGHVEQWHHAVDAAAALGADAVIMADPGLIAYAAKRHPS
HHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCC
LRIHLSVQGSATHADAIELMREQFGIRRVVLPRVLTVTQIAKLARQTDIELEVFGFGSLC
EEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEE
VMAEGRCLLSSYATGDSPNNKGVCSPAHAVRWDEQDGTMQARLSGILIDSYAPGEPAGYP
EEECCCEEEECCCCCCCCCCCCCCCCHHHEEECCCCCCCEEHEEEEEEECCCCCCCCCCC
TLCKGRFTVEGERGYVLEEPTSLNAVSLLPTLIDIGIAAIKIEGRQRSPRYVADVVGVLR
CEECCEEEEECCCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
AAIDDACRDPKRFAPRQEWQATLGRHAEGDQVTQGAYERPWR
HHHHHHHCCHHHCCCHHHHHHHHCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]