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The map label for this gene is nirD [H]

Identifier: 94313859

GI number: 94313859

Start: 1602473

End: 1603465

Strand: Direct

Name: nirD [H]

Synonym: Rmet_4937

Alternate gene names: 94313859

Gene position: 1602473-1603465 (Clockwise)

Preceding gene: 94313857

Following gene: 94313864

Centisome position: 62.11

GC content: 63.04

Gene sequence:

>993_bases
ATGTTTGATGACACCCAACTCTACGACCGCATTCAGCACGATTTCCCGCTCGACACCCGCCCCTATCAACGCGCGGCATC
ACTACTCGGCCTCTCCGAGCGAACGGTACTGAGCCTGCTTGCACGAGACCTCGGCAACGGACGCATCAGCCGCATCGGCG
CGGTGTTCGCCCCCAATTCGATCGGGACAAGCACGCTGGCCGCGCTGGCGGTGCCGCCCAATGAAATGAAGCAGGTGGCC
GAACGTCTGAACGCGGACCCGGCAATCAGTCACAACTATGCCCGTACTGGTCACCGCTACAACCTCTGGTTTGTCGCCGG
CGCGCGCGATCGCACGATGCTCGATGCCGTGCTGCACCACATCGCCGACGACGTGGGGTACCAGCCGATTGATCTGCCAC
TCGAACGCGAATATCACATCGACCTCGGTTTTCCACTCGGCAAGGGCCGGGAAGCCAGCAAACCAACCCGGCGAGCACCA
CCAGTATCCGTGCCCAAGCCCGAGATGGACGAGTGCGACTGGCGTCTGGTGACCGCGCTGGAACCTGGCCTGTCTCTGAC
GCCGGAGCCCTATCACGCGCTGGCCGAACGTTGTGGCCTGCCACTGACCGAGACGCTGCAGCGCCTGCAGCGGTGGCGCA
AGAACGGTGTGATCCGCCGCTTTGGCGTCATCCTGCACCATCGGCCATTCGGGTATTCGCACAATGCGATGTGCGTGTGG
AATGTGCCCGATGCGCGCGTCGATGCCATCGGGATGCGCATCGCCAGCCTGCCGCACGTCACGCTGTGCTACCGACGCCC
ACGACGCCTGCCAAACTGGCAATACAACCTCTTTGCCATGGTGCACGCACGCGGGATGCACGAACTCGAGATGACGCTGT
CGCGCTTCGATGCGATTGGCGGATTAGCCGCCATGCCGCACGCTGTACTTCGTGCCAGCCATTGCTTCAAGCAGCGCGGC
ACGCGCTACGGCAATATACCGGCGAGGGTCTAA

Upstream 100 bases:

>100_bases
CGGTCCCTCCTCGGACTCGCGGCCACGGCATCGGCCTTGATGCTTCGGCTTTGACACCTAGCGCCCGGGCCAATCCAAGT
GGATAGACCCGATCGTCGCC

Downstream 100 bases:

>100_bases
GCCCTCGCCCGCCCGCTTGCGCGGGCCTTATTTTTCCATTCAGGATTCCATTCAGGACGCCGTGGCCGGCGCGGGAAACA
GCACGGACAACCGCGCGGCG

Product: putative AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MFDDTQLYDRIQHDFPLDTRPYQRAASLLGLSERTVLSLLARDLGNGRISRIGAVFAPNSIGTSTLAALAVPPNEMKQVA
ERLNADPAISHNYARTGHRYNLWFVAGARDRTMLDAVLHHIADDVGYQPIDLPLEREYHIDLGFPLGKGREASKPTRRAP
PVSVPKPEMDECDWRLVTALEPGLSLTPEPYHALAERCGLPLTETLQRLQRWRKNGVIRRFGVILHHRPFGYSHNAMCVW
NVPDARVDAIGMRIASLPHVTLCYRRPRRLPNWQYNLFAMVHARGMHELEMTLSRFDAIGGLAAMPHAVLRASHCFKQRG
TRYGNIPARV

Sequences:

>Translated_330_residues
MFDDTQLYDRIQHDFPLDTRPYQRAASLLGLSERTVLSLLARDLGNGRISRIGAVFAPNSIGTSTLAALAVPPNEMKQVA
ERLNADPAISHNYARTGHRYNLWFVAGARDRTMLDAVLHHIADDVGYQPIDLPLEREYHIDLGFPLGKGREASKPTRRAP
PVSVPKPEMDECDWRLVTALEPGLSLTPEPYHALAERCGLPLTETLQRLQRWRKNGVIRRFGVILHHRPFGYSHNAMCVW
NVPDARVDAIGMRIASLPHVTLCYRRPRRLPNWQYNLFAMVHARGMHELEMTLSRFDAIGGLAAMPHAVLRASHCFKQRG
TRYGNIPARV
>Mature_330_residues
MFDDTQLYDRIQHDFPLDTRPYQRAASLLGLSERTVLSLLARDLGNGRISRIGAVFAPNSIGTSTLAALAVPPNEMKQVA
ERLNADPAISHNYARTGHRYNLWFVAGARDRTMLDAVLHHIADDVGYQPIDLPLEREYHIDLGFPLGKGREASKPTRRAP
PVSVPKPEMDECDWRLVTALEPGLSLTPEPYHALAERCGLPLTETLQRLQRWRKNGVIRRFGVILHHRPFGYSHNAMCVW
NVPDARVDAIGMRIASLPHVTLCYRRPRRLPNWQYNLFAMVHARGMHELEMTLSRFDAIGGLAAMPHAVLRASHCFKQRG
TRYGNIPARV

Specific function: Required for the biosynthesis of heme D1 of nitrite reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37313; Mature: 37313

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDDTQLYDRIQHDFPLDTRPYQRAASLLGLSERTVLSLLARDLGNGRISRIGAVFAPNS
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHEEEECCCC
IGTSTLAALAVPPNEMKQVAERLNADPAISHNYARTGHRYNLWFVAGARDRTMLDAVLHH
CCCHHHEEEECCHHHHHHHHHHHCCCCCCCCCHHHCCCEEEEEEEECCCCHHHHHHHHHH
IADDVGYQPIDLPLEREYHIDLGFPLGKGREASKPTRRAPPVSVPKPEMDECDWRLVTAL
HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
EPGLSLTPEPYHALAERCGLPLTETLQRLQRWRKNGVIRRFGVILHHRPFGYSHNAMCVW
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEE
NVPDARVDAIGMRIASLPHVTLCYRRPRRLPNWQYNLFAMVHARGMHELEMTLSRFDAIG
CCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHEEEEEHHCCHHHHHHHHHHHHHHC
GLAAMPHAVLRASHCFKQRGTRYGNIPARV
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFDDTQLYDRIQHDFPLDTRPYQRAASLLGLSERTVLSLLARDLGNGRISRIGAVFAPNS
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHEEEECCCC
IGTSTLAALAVPPNEMKQVAERLNADPAISHNYARTGHRYNLWFVAGARDRTMLDAVLHH
CCCHHHEEEECCHHHHHHHHHHHCCCCCCCCCHHHCCCEEEEEEEECCCCHHHHHHHHHH
IADDVGYQPIDLPLEREYHIDLGFPLGKGREASKPTRRAPPVSVPKPEMDECDWRLVTAL
HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
EPGLSLTPEPYHALAERCGLPLTETLQRLQRWRKNGVIRRFGVILHHRPFGYSHNAMCVW
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEE
NVPDARVDAIGMRIASLPHVTLCYRRPRRLPNWQYNLFAMVHARGMHELEMTLSRFDAIG
CCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHEEEEEHHCCHHHHHHHHHHHHHHC
GLAAMPHAVLRASHCFKQRGTRYGNIPARV
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7747927 [H]