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The map label for this gene is sorB [H]

Identifier: 94313814

GI number: 94313814

Start: 1555924

End: 1556580

Strand: Direct

Name: sorB [H]

Synonym: Rmet_4892

Alternate gene names: 94313814

Gene position: 1555924-1556580 (Clockwise)

Preceding gene: 94313813

Following gene: 94313817

Centisome position: 60.31

GC content: 66.67

Gene sequence:

>657_bases
ATGCAAAAGACCCCTTGCAGCCGCTTCCCGGCGCGACGCCTTGCCATCAGCCTGGCGCTGATGCTCTCCGCCCTGCCCGC
CGCGCACGCGCTGGAAATCCAGCTTCCACCCGAAACCGCAAGCTATCAACCCAGCGAACTGCCCGGCTATCGGCTGGTGC
AGCAGAACTGCATGACCTGCCATTCGGCGCAGTACGTGTCGACTCAGCCGCAGTCGCTGGGCCGCGCTTACTGGGATGCC
ACCGTCAAGAAGATGAAGACTGCCTTCGGCGCGCCACTGCGCGACGAAGACATCCCGGTGATGGCCGACTATCTGGTCCG
GACCTATGGTGCGGAACGCCAGACGACCGCTGCCGCGGCCGTATCGCCTGCTCCCGCCGCATCGGCAAAGCCAGCGCCAG
CCAAGGCACACGACGCCAGCAGCCTCCTCGCGGCCAACAACTGCCTCGCCTGCCACGCCGTGGACAAGAAGGTGGTGGGC
CCCGCATTCCACGATGTTGCCGCGAAATACGCCGGCCAGGCCGATGCCGTCAGCACCGTGATGCGTAGCATCCGCGCCGG
AGGCAGCGGCAAATGGGGAAGCGTGCCGATGCCGCCGTTCGCGGATGTCAGCGACGCCGACCTGCGCGAACTGGCTGGCT
GGGTACTCGGGCGCTAA

Upstream 100 bases:

>100_bases
ATCGGCCAGAGCCAGCCGATGACGGCGTTGTGGAATCCGGCCGGCTACATGCGCAACGTGGTGGAAACCACGCGCGTCAA
GGCAGTCTGAGGAGCCCACC

Downstream 100 bases:

>100_bases
AGGACTGCGTTCAGAAGCCCAGGTCGCTCAGGCCCGGATGGTCATCGGGCCGGCGACCGAGCGGCCAGTGGTACTTGCGA
TCGCTCTCGCGGATCGGTGC

Product: Sulfite:cytochrome c oxidoreductase subunit B

Products: NA

Alternate protein names: Cytochrome c-551; Cytochrome c552 [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQKTPCSRFPARRLAISLALMLSALPAAHALEIQLPPETASYQPSELPGYRLVQQNCMTCHSAQYVSTQPQSLGRAYWDA
TVKKMKTAFGAPLRDEDIPVMADYLVRTYGAERQTTAAAAVSPAPAASAKPAPAKAHDASSLLAANNCLACHAVDKKVVG
PAFHDVAAKYAGQADAVSTVMRSIRAGGSGKWGSVPMPPFADVSDADLRELAGWVLGR

Sequences:

>Translated_218_residues
MQKTPCSRFPARRLAISLALMLSALPAAHALEIQLPPETASYQPSELPGYRLVQQNCMTCHSAQYVSTQPQSLGRAYWDA
TVKKMKTAFGAPLRDEDIPVMADYLVRTYGAERQTTAAAAVSPAPAASAKPAPAKAHDASSLLAANNCLACHAVDKKVVG
PAFHDVAAKYAGQADAVSTVMRSIRAGGSGKWGSVPMPPFADVSDADLRELAGWVLGR
>Mature_218_residues
MQKTPCSRFPARRLAISLALMLSALPAAHALEIQLPPETASYQPSELPGYRLVQQNCMTCHSAQYVSTQPQSLGRAYWDA
TVKKMKTAFGAPLRDEDIPVMADYLVRTYGAERQTTAAAAVSPAPAASAKPAPAKAHDASSLLAANNCLACHAVDKKVVG
PAFHDVAAKYAGQADAVSTVMRSIRAGGSGKWGSVPMPPFADVSDADLRELAGWVLGR

Specific function: Monoheme c-type cytochrome. Probable electron donor to membrane cytochrome oxidase and to periplasmic nitrite reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002324 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 23063; Mature: 23063

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKTPCSRFPARRLAISLALMLSALPAAHALEIQLPPETASYQPSELPGYRLVQQNCMTC
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
HSAQYVSTQPQSLGRAYWDATVKKMKTAFGAPLRDEDIPVMADYLVRTYGAERQTTAAAA
HCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
VSPAPAASAKPAPAKAHDASSLLAANNCLACHAVDKKVVGPAFHDVAAKYAGQADAVSTV
CCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCHHHCCHHHHHHHHHHCCCHHHHHHH
MRSIRAGGSGKWGSVPMPPFADVSDADLRELAGWVLGR
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MQKTPCSRFPARRLAISLALMLSALPAAHALEIQLPPETASYQPSELPGYRLVQQNCMTC
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
HSAQYVSTQPQSLGRAYWDATVKKMKTAFGAPLRDEDIPVMADYLVRTYGAERQTTAAAA
HCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
VSPAPAASAKPAPAKAHDASSLLAANNCLACHAVDKKVVGPAFHDVAAKYAGQADAVSTV
CCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCHHHCCHHHHHHHHHHCCCHHHHHHH
MRSIRAGGSGKWGSVPMPPFADVSDADLRELAGWVLGR
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9746537; 12700255 [H]