Click here to switch to the map view.

The map label for this gene is ydhJ [H]

Identifier: 94313713

GI number: 94313713

Start: 1435784

End: 1436770

Strand: Reverse

Name: ydhJ [H]

Synonym: Rmet_4791

Alternate gene names: 94313713

Gene position: 1436770-1435784 (Counterclockwise)

Preceding gene: 94313714

Following gene: 94313712

Centisome position: 55.69

GC content: 65.86

Gene sequence:

>987_bases
ATGAAACTGAGACTCTCCTCGCTCGGGCCAGTTGTGCTGACGCTGGCCGTCACCGCCGTTGGCGCGGTCGTCGTCAAACA
CCTGTGGGACTACTACACCGTGGCGCCGTGGACGCGCGACGGTCACATTCGCGCCGAGGTGGTGCAGGTGGCGCCCGATG
TCTCCGGGCTGGTCACGCGGATCGCGGTCAAGGACAACCAGCATGTGAAGGCAGGCGACGTCCTGTTCGAGATCGACCAC
GAGCGCTATGCGCTGGCGCTGCGTCAGGCGGAAGCCACGGCGGCGGCGGTGCGCGCCAATCTGGCCCAGGCACGCCGCGA
GGCGAAGCGCAGCCAGACGCTTTCCGAGGTGGTTTCCAAGGAAATCGTCGAAGAGGGGCTGGCCAAGGTGCAGCAGGGCG
AGGCCCAGCTGGCACAGGCCGAGGCCGCGATCGGCGTGGCGAAGCTGAATCTGGAGCGCACCCACGTGGTGAGCCCGGTG
GAAGGCTACGTCAACGACCGCCTGCCGCGTCTGGGGGATTACGTCGTGACCGGCAAGCCGGTGCTGTCGATGGTCGATTC
GAACTCGTTCCACGTGGAAGGCTACTTCGAGGAAACCAAGCTGAAGGGTATCCATATCGGCAGCCCCGTCGATATCCGCG
TCATGGGCGAGAAGCGCGTGCTGCACGGCCATGTGCAGAGCATCGCAGCCGGTATCGAAGACCGTGATCGCACCAATGGC
TCGAACCTGCTGCCGAACGTGAATCCGACGTTCAACTGGGTGCGTCTGGCGCAGCGCGTGCCGGTGCGCATCCAGTTCGA
CCAGATGCCCGAGGATGTGCGCCTGGTGGCAGGACGCACGGCCACCGTATCGGTGAAGGCCGATGACGAGAAGAACATCG
GGGAAACGGGAGACAAGCCGACCGCGCCGGCGGCCGGCCGTAGTGCCTCGCAGGACAAGGTTGCGCTGGCCGGCAAGCGC
GCGCCCTCAACCGGAGCAGTGCAGTGA

Upstream 100 bases:

>100_bases
TCGGCTTCTACAAGCTCGTGTGGCACCGTTCCCTCTTCAACCTGGCGCTATATGCGATCGTCCTCGGTGGGGTGGTTGCG
TTGGTGCCCTCGCTGCAATC

Downstream 100 bases:

>100_bases
AACGCTTTGCCCGTGCCTCGCTGGCGGCGATGTTGCCGCTTGCGCTGGCCGCTTGCATGACCGTCGGCCCTGATCACAAG
GTGCCCGACGATGCGGTCGT

Product: putative secretion protein HlyD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKLRLSSLGPVVLTLAVTAVGAVVVKHLWDYYTVAPWTRDGHIRAEVVQVAPDVSGLVTRIAVKDNQHVKAGDVLFEIDH
ERYALALRQAEATAAAVRANLAQARREAKRSQTLSEVVSKEIVEEGLAKVQQGEAQLAQAEAAIGVAKLNLERTHVVSPV
EGYVNDRLPRLGDYVVTGKPVLSMVDSNSFHVEGYFEETKLKGIHIGSPVDIRVMGEKRVLHGHVQSIAAGIEDRDRTNG
SNLLPNVNPTFNWVRLAQRVPVRIQFDQMPEDVRLVAGRTATVSVKADDEKNIGETGDKPTAPAAGRSASQDKVALAGKR
APSTGAVQ

Sequences:

>Translated_328_residues
MKLRLSSLGPVVLTLAVTAVGAVVVKHLWDYYTVAPWTRDGHIRAEVVQVAPDVSGLVTRIAVKDNQHVKAGDVLFEIDH
ERYALALRQAEATAAAVRANLAQARREAKRSQTLSEVVSKEIVEEGLAKVQQGEAQLAQAEAAIGVAKLNLERTHVVSPV
EGYVNDRLPRLGDYVVTGKPVLSMVDSNSFHVEGYFEETKLKGIHIGSPVDIRVMGEKRVLHGHVQSIAAGIEDRDRTNG
SNLLPNVNPTFNWVRLAQRVPVRIQFDQMPEDVRLVAGRTATVSVKADDEKNIGETGDKPTAPAAGRSASQDKVALAGKR
APSTGAVQ
>Mature_328_residues
MKLRLSSLGPVVLTLAVTAVGAVVVKHLWDYYTVAPWTRDGHIRAEVVQVAPDVSGLVTRIAVKDNQHVKAGDVLFEIDH
ERYALALRQAEATAAAVRANLAQARREAKRSQTLSEVVSKEIVEEGLAKVQQGEAQLAQAEAAIGVAKLNLERTHVVSPV
EGYVNDRLPRLGDYVVTGKPVLSMVDSNSFHVEGYFEETKLKGIHIGSPVDIRVMGEKRVLHGHVQSIAAGIEDRDRTNG
SNLLPNVNPTFNWVRLAQRVPVRIQFDQMPEDVRLVAGRTATVSVKADDEKNIGETGDKPTAPAAGRSASQDKVALAGKR
APSTGAVQ

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=273, Percent_Identity=42.8571428571429, Blast_Score=231, Evalue=5e-62,
Organism=Escherichia coli, GI1789637, Length=293, Percent_Identity=37.8839590443686, Blast_Score=205, Evalue=4e-54,
Organism=Escherichia coli, GI1790519, Length=305, Percent_Identity=31.8032786885246, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1788711, Length=355, Percent_Identity=28.169014084507, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789041, Length=330, Percent_Identity=26.3636363636364, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082036, Length=172, Percent_Identity=31.3953488372093, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 35471; Mature: 35471

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRLSSLGPVVLTLAVTAVGAVVVKHLWDYYTVAPWTRDGHIRAEVVQVAPDVSGLVTR
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEECCCHHHHEEE
IAVKDNQHVKAGDVLFEIDHERYALALRQAEATAAAVRANLAQARREAKRSQTLSEVVSK
EEECCCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVEEGLAKVQQGEAQLAQAEAAIGVAKLNLERTHVVSPVEGYVNDRLPRLGDYVVTGKP
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHCCCCHHHHHHCCCCCCCCEEEECCH
VLSMVDSNSFHVEGYFEETKLKGIHIGSPVDIRVMGEKRVLHGHVQSIAAGIEDRDRTNG
HHHEECCCCEEEEEEEECCEECEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCC
SNLLPNVNPTFNWVRLAQRVPVRIQFDQMPEDVRLVAGRTATVSVKADDEKNIGETGDKP
CCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCC
TAPAAGRSASQDKVALAGKRAPSTGAVQ
CCCCCCCCCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MKLRLSSLGPVVLTLAVTAVGAVVVKHLWDYYTVAPWTRDGHIRAEVVQVAPDVSGLVTR
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEECCCHHHHEEE
IAVKDNQHVKAGDVLFEIDHERYALALRQAEATAAAVRANLAQARREAKRSQTLSEVVSK
EEECCCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVEEGLAKVQQGEAQLAQAEAAIGVAKLNLERTHVVSPVEGYVNDRLPRLGDYVVTGKP
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHCCCCHHHHHHCCCCCCCCEEEECCH
VLSMVDSNSFHVEGYFEETKLKGIHIGSPVDIRVMGEKRVLHGHVQSIAAGIEDRDRTNG
HHHEECCCCEEEEEEEECCEECEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCC
SNLLPNVNPTFNWVRLAQRVPVRIQFDQMPEDVRLVAGRTATVSVKADDEKNIGETGDKP
CCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCC
TAPAAGRSASQDKVALAGKRAPSTGAVQ
CCCCCCCCCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]