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The map label for this gene is yddU [C]

Identifier: 94313648

GI number: 94313648

Start: 1368754

End: 1370784

Strand: Reverse

Name: yddU [C]

Synonym: Rmet_4726

Alternate gene names: 94313648

Gene position: 1370784-1368754 (Counterclockwise)

Preceding gene: 291481539

Following gene: 94313646

Centisome position: 53.13

GC content: 63.47

Gene sequence:

>2031_bases
GTGCTGCGGTGCAGCGCGATCGTCGTGCATGAATGTGACGATAACGTGACACCCCCTGAATGGGTGGCGTCGTCATACTG
GCGACACATTGCTGTCATGAAATGGCGGACGCTCCATTTATCGTTCGCGCCGAAAGCCGCCTCGTGGCATCACGGCCTCC
CGGCCGATAACCTGCCATTCAACCCTTATCCGCATGTCATGCTGACCGTCGCCTCCTCGTTGGCCACGGCCCGAGAGGCT
GTGTGCCTGCCTTCGCTGCAGGCGGTATTCCAGCCTATCGTGTCGCTGGGCAATGGGGACATTCTTGGTCATGAGGCGTT
GATTCGCGGCCCGGCCGCATCGTTGCACGAGATGCCTGACGCCTTGTTCCGACGCGCGCAGGCAAATGGGACAACCGTGG
CGCTTGAAGTGGCGGCAGCCCGTACCGCGCTCGATGCGTGGTCGTCGCTGAACCTGCCCGGCAAGCTGTTCCTGAACTTC
AGTCCATTGACGCTGCGCCATCTTCTGGTCGGGCGTGGACACGCCATGGCCGCGTTGCTGGGGGCCGATGGCATTGTCGG
CGGAGCGGCGGCTATCGCACCATCCCGGGTCGTCATCGAGATCACGGAGCAGACTGCCATCGGCAATGCCCAGACCTTTG
GCGAGGCCATGGCGTTGCTCGGCGAGCTAGGCGTGCATTACGCTCTGGACGATTTCGGCTCGGGACATGCCAATCTCGAC
ATGCTGGCCGATCTGTCGCCGCAGTTCATCAAGCTGGACAAGTCGCTCGTGCGCGGGATAGGCACGTGCTCGCGCCGGCT
GGAGATACTGCGCGGGATGCTACGCATGATGGGAGCATTCGGTGGGCACGTGATCGCAGAAGGCATCGAGCGGGCCGAGG
AACTGGCCATGGTGCGGGATCTTGGTGTTTTCGCGGGCCAGGGCTACTTTTTGGGGAGGCCAGTGGCGCAGCCTGAACGG
CAAGCGTCGCTGGAGGTGCGGGCTGTGCTGGCCTCGCGTCAGATCGCGGTGTTTCCCCAAGCCTTGCGCTCGGGGTGGTC
GGGCATGACAGCCGGGCAACTCCTGCGCCCCGCGCCCACGATTCATCCGGCTACCTCCAATAACGACGTCCTGGCGCGGT
TTCACAGCCAGCCCGATCTGCACGCCATGGCGGTGGTGGACGAGGCCATGCGGCCGGTGGCGATGATGAACCGGCAAATC
CTGATCGACCGCTACGCCACGCCATTTCATCGGGAACTCTATGGCAGGAAGGCCTGCATCACGATCGCCAATCCGGCGCC
AGTTTGCTTCGACCGCCGCACCAGTCTGGAGGATATGGCCGAACTCTTCGCGGGCGAGCAATCGCATGTGCTGGCCGATG
GTTTCGTGATCACTGATCAAGGCAGATACGTGGGTCTTGGCACCGTGGCCGATTTGCTACGCGCCACCACCGAGGTACGC
ATGGAGGCGGCACGTTATGCGAATCCGCTGACGTTCCTGCCCGGAAACATCCTGCTGAACCAGCACGTCGACCGACTCAT
CGCAGCTGGCAGCGCGTTCCATGCGTGCTACGTCGACCTCAACCAGTTCAAGCCATTCAACGATCGCTACGGCTACTGGA
AGGGCGACGAAATGCTGAAGGGCGCGGCCGCGATTCTGGCGCAGGCTTGTGACCCCGCGCGCGACTTCCTTGGACATGTC
GGCGGCGACGACTTCCTGGTGTTGTACCAGGGGGACGATTGGGAGGTGCGTATCCGGGACGCCATCGCACGCTTCAACGA
TGCGGCACTGATGTCGTACTCGTCGACGGATCGTGCTGCTGGCGGTATTCACGGCGAGGACCGGTTCGGCAATCCGGCGT
TTTGCGTGCCGGTAACGATGGCCGCCGGCGTGGTCAGTGTCGGTGCGGAAGCAATGGCGACGCTGCGGCTATGCAGTCAG
CATATCGGCGCGGCCTCGGCGGTGGCCAAGCGCAGCGCCAAGCGCGCGCCATCAGGCGTTGCGCGGATCGATATCGCCGA
ACTGGCTGCGCGCGGCGCGCTCGATATCTAG

Upstream 100 bases:

>100_bases
GAAACACTCCTTCGGGGCCGCGACCCCGTCATTCCATGACCCGATGCGCTGCGGCATGCCGGCCTCTCGGTCATTCCCTG
GAGAGTGCGGGGCGTCGGTC

Downstream 100 bases:

>100_bases
ATCTGGATTTTCAGGCGGTCTTACGAAAGCAATTTGAACATCCGCGCAGGGGTCGATGACGCGGAGGCCGCGCGAGCGGC
AGCGGACAATTCGTGGCGCG

Product: Diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 676; Mature: 676

Protein sequence:

>676_residues
MLRCSAIVVHECDDNVTPPEWVASSYWRHIAVMKWRTLHLSFAPKAASWHHGLPADNLPFNPYPHVMLTVASSLATAREA
VCLPSLQAVFQPIVSLGNGDILGHEALIRGPAASLHEMPDALFRRAQANGTTVALEVAAARTALDAWSSLNLPGKLFLNF
SPLTLRHLLVGRGHAMAALLGADGIVGGAAAIAPSRVVIEITEQTAIGNAQTFGEAMALLGELGVHYALDDFGSGHANLD
MLADLSPQFIKLDKSLVRGIGTCSRRLEILRGMLRMMGAFGGHVIAEGIERAEELAMVRDLGVFAGQGYFLGRPVAQPER
QASLEVRAVLASRQIAVFPQALRSGWSGMTAGQLLRPAPTIHPATSNNDVLARFHSQPDLHAMAVVDEAMRPVAMMNRQI
LIDRYATPFHRELYGRKACITIANPAPVCFDRRTSLEDMAELFAGEQSHVLADGFVITDQGRYVGLGTVADLLRATTEVR
MEAARYANPLTFLPGNILLNQHVDRLIAAGSAFHACYVDLNQFKPFNDRYGYWKGDEMLKGAAAILAQACDPARDFLGHV
GGDDFLVLYQGDDWEVRIRDAIARFNDAALMSYSSTDRAAGGIHGEDRFGNPAFCVPVTMAAGVVSVGAEAMATLRLCSQ
HIGAASAVAKRSAKRAPSGVARIDIAELAARGALDI

Sequences:

>Translated_676_residues
MLRCSAIVVHECDDNVTPPEWVASSYWRHIAVMKWRTLHLSFAPKAASWHHGLPADNLPFNPYPHVMLTVASSLATAREA
VCLPSLQAVFQPIVSLGNGDILGHEALIRGPAASLHEMPDALFRRAQANGTTVALEVAAARTALDAWSSLNLPGKLFLNF
SPLTLRHLLVGRGHAMAALLGADGIVGGAAAIAPSRVVIEITEQTAIGNAQTFGEAMALLGELGVHYALDDFGSGHANLD
MLADLSPQFIKLDKSLVRGIGTCSRRLEILRGMLRMMGAFGGHVIAEGIERAEELAMVRDLGVFAGQGYFLGRPVAQPER
QASLEVRAVLASRQIAVFPQALRSGWSGMTAGQLLRPAPTIHPATSNNDVLARFHSQPDLHAMAVVDEAMRPVAMMNRQI
LIDRYATPFHRELYGRKACITIANPAPVCFDRRTSLEDMAELFAGEQSHVLADGFVITDQGRYVGLGTVADLLRATTEVR
MEAARYANPLTFLPGNILLNQHVDRLIAAGSAFHACYVDLNQFKPFNDRYGYWKGDEMLKGAAAILAQACDPARDFLGHV
GGDDFLVLYQGDDWEVRIRDAIARFNDAALMSYSSTDRAAGGIHGEDRFGNPAFCVPVTMAAGVVSVGAEAMATLRLCSQ
HIGAASAVAKRSAKRAPSGVARIDIAELAARGALDI
>Mature_676_residues
MLRCSAIVVHECDDNVTPPEWVASSYWRHIAVMKWRTLHLSFAPKAASWHHGLPADNLPFNPYPHVMLTVASSLATAREA
VCLPSLQAVFQPIVSLGNGDILGHEALIRGPAASLHEMPDALFRRAQANGTTVALEVAAARTALDAWSSLNLPGKLFLNF
SPLTLRHLLVGRGHAMAALLGADGIVGGAAAIAPSRVVIEITEQTAIGNAQTFGEAMALLGELGVHYALDDFGSGHANLD
MLADLSPQFIKLDKSLVRGIGTCSRRLEILRGMLRMMGAFGGHVIAEGIERAEELAMVRDLGVFAGQGYFLGRPVAQPER
QASLEVRAVLASRQIAVFPQALRSGWSGMTAGQLLRPAPTIHPATSNNDVLARFHSQPDLHAMAVVDEAMRPVAMMNRQI
LIDRYATPFHRELYGRKACITIANPAPVCFDRRTSLEDMAELFAGEQSHVLADGFVITDQGRYVGLGTVADLLRATTEVR
MEAARYANPLTFLPGNILLNQHVDRLIAAGSAFHACYVDLNQFKPFNDRYGYWKGDEMLKGAAAILAQACDPARDFLGHV
GGDDFLVLYQGDDWEVRIRDAIARFNDAALMSYSSTDRAAGGIHGEDRFGNPAFCVPVTMAAGVVSVGAEAMATLRLCSQ
HIGAASAVAKRSAKRAPSGVARIDIAELAARGALDI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=254, Percent_Identity=30.3149606299213, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87082096, Length=127, Percent_Identity=37.007874015748, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1788502, Length=234, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787410, Length=240, Percent_Identity=25, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI87081845, Length=120, Percent_Identity=30.8333333333333, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788849, Length=232, Percent_Identity=27.1551724137931, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=23.5059760956175, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1787541, Length=117, Percent_Identity=32.4786324786325, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786507, Length=291, Percent_Identity=25.4295532646048, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI226510982, Length=234, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 72711; Mature: 72711

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRCSAIVVHECDDNVTPPEWVASSYWRHIAVMKWRTLHLSFAPKAASWHHGLPADNLPF
CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCC
NPYPHVMLTVASSLATAREAVCLPSLQAVFQPIVSLGNGDILGHEALIRGPAASLHEMPD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHCCCHHHHHHHHH
ALFRRAQANGTTVALEVAAARTALDAWSSLNLPGKLFLNFSPLTLRHLLVGRGHAMAALL
HHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHH
GADGIVGGAAAIAPSRVVIEITEQTAIGNAQTFGEAMALLGELGVHYALDDFGSGHANLD
CCCCCCCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEHHCCCCCCCCCH
MLADLSPQFIKLDKSLVRGIGTCSRRLEILRGMLRMMGAFGGHVIAEGIERAEELAMVRD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGVFAGQGYFLGRPVAQPERQASLEVRAVLASRQIAVFPQALRSGWSGMTAGQLLRPAPT
HHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHCHHHCCHHHHHCCCCCCCCCHHCCCCCC
IHPATSNNDVLARFHSQPDLHAMAVVDEAMRPVAMMNRQILIDRYATPFHRELYGRKACI
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHEEHHCCCHHHHHHCCCCEEE
TIANPAPVCFDRRTSLEDMAELFAGEQSHVLADGFVITDQGRYVGLGTVADLLRATTEVR
EECCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCEEEECCCCEEEHHHHHHHHHHHHHHH
MEAARYANPLTFLPGNILLNQHVDRLIAAGSAFHACYVDLNQFKPFNDRYGYWKGDEMLK
HHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCCCCCCHHHHH
GAAAILAQACDPARDFLGHVGGDDFLVLYQGDDWEVRIRDAIARFNDAALMSYSSTDRAA
HHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHCCCHHEEEECCCCCCC
GGIHGEDRFGNPAFCVPVTMAAGVVSVGAEAMATLRLCSQHIGAASAVAKRSAKRAPSGV
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCC
ARIDIAELAARGALDI
CEEEHHHHHHCCCCCC
>Mature Secondary Structure
MLRCSAIVVHECDDNVTPPEWVASSYWRHIAVMKWRTLHLSFAPKAASWHHGLPADNLPF
CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCC
NPYPHVMLTVASSLATAREAVCLPSLQAVFQPIVSLGNGDILGHEALIRGPAASLHEMPD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHCCCHHHHHHHHH
ALFRRAQANGTTVALEVAAARTALDAWSSLNLPGKLFLNFSPLTLRHLLVGRGHAMAALL
HHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHH
GADGIVGGAAAIAPSRVVIEITEQTAIGNAQTFGEAMALLGELGVHYALDDFGSGHANLD
CCCCCCCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEHHCCCCCCCCCH
MLADLSPQFIKLDKSLVRGIGTCSRRLEILRGMLRMMGAFGGHVIAEGIERAEELAMVRD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGVFAGQGYFLGRPVAQPERQASLEVRAVLASRQIAVFPQALRSGWSGMTAGQLLRPAPT
HHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHCHHHCCHHHHHCCCCCCCCCHHCCCCCC
IHPATSNNDVLARFHSQPDLHAMAVVDEAMRPVAMMNRQILIDRYATPFHRELYGRKACI
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHEEHHCCCHHHHHHCCCCEEE
TIANPAPVCFDRRTSLEDMAELFAGEQSHVLADGFVITDQGRYVGLGTVADLLRATTEVR
EECCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCEEEECCCCEEEHHHHHHHHHHHHHHH
MEAARYANPLTFLPGNILLNQHVDRLIAAGSAFHACYVDLNQFKPFNDRYGYWKGDEMLK
HHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCCCCCCHHHHH
GAAAILAQACDPARDFLGHVGGDDFLVLYQGDDWEVRIRDAIARFNDAALMSYSSTDRAA
HHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHCCCHHEEEECCCCCCC
GGIHGEDRFGNPAFCVPVTMAAGVVSVGAEAMATLRLCSQHIGAASAVAKRSAKRAPSGV
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCC
ARIDIAELAARGALDI
CEEEHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]