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The map label for this gene is ydeD [C]

Identifier: 94313327

GI number: 94313327

Start: 997723

End: 998643

Strand: Reverse

Name: ydeD [C]

Synonym: Rmet_4402

Alternate gene names: 94313327

Gene position: 998643-997723 (Counterclockwise)

Preceding gene: 94313328

Following gene: 94313325

Centisome position: 38.71

GC content: 65.15

Gene sequence:

>921_bases
ATGTCAGAACGCCCGACGTATGAGGTACCCGCCGCAACGCCGGGCGCCACACCGAACACGCAGTGGCTGCGCGTAGCGCC
CGCGCTATTCCTGCTGCTCTGGTCCGGCGGATTCGTCTTTCTGAAGCTCGGCCTGCGCCACGCCGATCCGCTGACCTTTC
TGGCGTTGCGCTATGCATGCGTGGTCGGCCTGCTGATCGTCCCCTGCCTCTGGATCCGCCCTGCGTTCCCGCCGGGCATC
AAGCCCTGGCTGCATCTGGGCATGGTGGGCCTGCTGATTCAGGCCGGCTATTTCTCGTTCACCTATCTGAGTCTCAAACA
CGGCATGTCGGCCGGCGCGGTTGCGCTCGTCACGTCACAGCAACCGATCCTGATCGGGCTGCTCGCGCCAGCCATCGCCG
GCGAACGCGTGGACCGGGTGCGATGGCTTGGGCTGGCACTTGGCGTAACGGGCGCGGTGATCGTCATCACATCCCGATCG
TCCATCGACGTGGCCACCCCTGCCGGGCTGATATTCGCCTTGCTCGCGCTGTTGGCGATGACAGGTGGCACGTTGTGGGA
AAAGCGCTTCGGCACGACCGTGCATCCGGTGGCCTCGAATCTCGTGCAGTACGCCGTCGGGCTGGTCGTCACCGCGCCGC
TGGCCTATGCGCTCGAACCGATGCATGTGGCATGGACGCCGGAGCTGTTCGGATCGCTGGCCTACCTGGTGATTGGCAAT
TCGATCATCGCCATTTCGCTGCTGCTGGCGATGATCCGGCATGGCGAGGCCTCGCGGGTATCGGCGCTGTTCTTCCTCGT
GCCACCGATGACGGCGGTGGTCGCCTTCGCGGTGCTTGGCGAGTCGATTCCGCTCGCGGCATGGCCGGGGATGGCCATGG
CCGCAATCGGGCTCTATCTGGTAATGGGCAGGCGGAGTTGA

Upstream 100 bases:

>100_bases
CCGCCGAATCCATGACGGCGCACTGATCGGGAAAGCACGCTAGGCGGCGCGGGCTGGAAAGTGCTACTGTCGCCCCATCC
CCCGCTCCCGCCAGCCAGGC

Downstream 100 bases:

>100_bases
TAGACCCGAAGACGCCCATCAGTGCGGGCCAGCCGCGTATCGTCCGCGCAGTGCCTTGATGACGCGCCGCTCCGCCAGCA
CCACGACGTAGTCCAGAATC

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSERPTYEVPAATPGATPNTQWLRVAPALFLLLWSGGFVFLKLGLRHADPLTFLALRYACVVGLLIVPCLWIRPAFPPGI
KPWLHLGMVGLLIQAGYFSFTYLSLKHGMSAGAVALVTSQQPILIGLLAPAIAGERVDRVRWLGLALGVTGAVIVITSRS
SIDVATPAGLIFALLALLAMTGGTLWEKRFGTTVHPVASNLVQYAVGLVVTAPLAYALEPMHVAWTPELFGSLAYLVIGN
SIIAISLLLAMIRHGEASRVSALFFLVPPMTAVVAFAVLGESIPLAAWPGMAMAAIGLYLVMGRRS

Sequences:

>Translated_306_residues
MSERPTYEVPAATPGATPNTQWLRVAPALFLLLWSGGFVFLKLGLRHADPLTFLALRYACVVGLLIVPCLWIRPAFPPGI
KPWLHLGMVGLLIQAGYFSFTYLSLKHGMSAGAVALVTSQQPILIGLLAPAIAGERVDRVRWLGLALGVTGAVIVITSRS
SIDVATPAGLIFALLALLAMTGGTLWEKRFGTTVHPVASNLVQYAVGLVVTAPLAYALEPMHVAWTPELFGSLAYLVIGN
SIIAISLLLAMIRHGEASRVSALFFLVPPMTAVVAFAVLGESIPLAAWPGMAMAAIGLYLVMGRRS
>Mature_305_residues
SERPTYEVPAATPGATPNTQWLRVAPALFLLLWSGGFVFLKLGLRHADPLTFLALRYACVVGLLIVPCLWIRPAFPPGIK
PWLHLGMVGLLIQAGYFSFTYLSLKHGMSAGAVALVTSQQPILIGLLAPAIAGERVDRVRWLGLALGVTGAVIVITSRSS
IDVATPAGLIFALLALLAMTGGTLWEKRFGTTVHPVASNLVQYAVGLVVTAPLAYALEPMHVAWTPELFGSLAYLVIGNS
IIAISLLLAMIRHGEASRVSALFFLVPPMTAVVAFAVLGESIPLAAWPGMAMAAIGLYLVMGRRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32503; Mature: 32372

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERPTYEVPAATPGATPNTQWLRVAPALFLLLWSGGFVFLKLGLRHADPLTFLALRYAC
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
VVGLLIVPCLWIRPAFPPGIKPWLHLGMVGLLIQAGYFSFTYLSLKHGMSAGAVALVTSQ
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
QPILIGLLAPAIAGERVDRVRWLGLALGVTGAVIVITSRSSIDVATPAGLIFALLALLAM
CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
TGGTLWEKRFGTTVHPVASNLVQYAVGLVVTAPLAYALEPMHVAWTPELFGSLAYLVIGN
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCC
SIIAISLLLAMIRHGEASRVSALFFLVPPMTAVVAFAVLGESIPLAAWPGMAMAAIGLYL
HHHHHHHHHHHHHCCCCHHHHHHEEHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VMGRRS
HHCCCC
>Mature Secondary Structure 
SERPTYEVPAATPGATPNTQWLRVAPALFLLLWSGGFVFLKLGLRHADPLTFLALRYAC
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
VVGLLIVPCLWIRPAFPPGIKPWLHLGMVGLLIQAGYFSFTYLSLKHGMSAGAVALVTSQ
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
QPILIGLLAPAIAGERVDRVRWLGLALGVTGAVIVITSRSSIDVATPAGLIFALLALLAM
CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
TGGTLWEKRFGTTVHPVASNLVQYAVGLVVTAPLAYALEPMHVAWTPELFGSLAYLVIGN
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCC
SIIAISLLLAMIRHGEASRVSALFFLVPPMTAVVAFAVLGESIPLAAWPGMAMAAIGLYL
HHHHHHHHHHHHHCCCCHHHHHHEEHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VMGRRS
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]