Click here to switch to the map view.

The map label for this gene is yraR [H]

Identifier: 94313215

GI number: 94313215

Start: 880382

End: 881053

Strand: Reverse

Name: yraR [H]

Synonym: Rmet_4289

Alternate gene names: 94313215

Gene position: 881053-880382 (Counterclockwise)

Preceding gene: 94313216

Following gene: 94313214

Centisome position: 34.15

GC content: 65.62

Gene sequence:

>672_bases
TTGTCCACGCCTATCGATCAACGCAAGGTGCTGCTGGCCGGCGCCACCGGACTCGTGGGAGGCCTGATGCTTCAGGCTCT
GCTGGCGGACCCGACCGTCGCGCAGGTGCATGCCCTGAGCCGTCGCCCATTGCGCATCCGCCATCCCAGGCTTCAGGTCC
ATATCGTGGATTTCAGCCGGTTGCCCGCGCTCCCGCAGGCCGACGAGGTGTATCTGGCGCTCGGCACCACGATCAAGGTG
GCGGGCAGTCAAGCGGCGTTCCGCGCTGTCGACCTGGAGGCCAATCTGGCTGTAGCCAAGGCCGCGTTTGCCGCGGGGGC
CAGTCGCGCAGGTCTGGTCAGTGCGGTTGGCGCAAACGCGAAGTCCTCCACGTTCTACAGCCGCGTCAAGGGTGAATTGG
AGGACGCCCTCAGGTCGTTGGGGCTGACGACGCTGGTGATCGGGCGACCGTCGCTGCTGCTGGATTCTCGGGATGGACTG
CAGCAACCGCCGCGCATCGGTGAACAGATTGCCATCCCGATCGCGAAGCTGCTGGCTCCCCTGCTACCCGGAGCCTATCG
GCCAGTGCATGCACGCGCAGTCGCGCTGTCACTGGTCAAGACCGTGCCTGCAACCGAGGGGGTGGTCATTCTGTCTTCCA
GCATGCTCGCCAGCATTGGCAGCGAGCCCTGA

Upstream 100 bases:

>100_bases
GAGGATCCCAACTCCTTTTATCGCGCATTCCAGGAATGGACCGGGCAAACGCCTGACAGCGCCCGTCGTGCCATGCACCT
GAACTGAGGAGACGCACACC

Downstream 100 bases:

>100_bases
GCACGACGGGGACCATGCCTTGACGCCACTCGCGAGGCGTTTGGCGCTTTTTGCTTGAATCGTGGCGCCGATCGCTAGAG
GCCCAACGCCGCTCGATGCG

Product: nucleoside-diphosphate-sugar epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSTPIDQRKVLLAGATGLVGGLMLQALLADPTVAQVHALSRRPLRIRHPRLQVHIVDFSRLPALPQADEVYLALGTTIKV
AGSQAAFRAVDLEANLAVAKAAFAAGASRAGLVSAVGANAKSSTFYSRVKGELEDALRSLGLTTLVIGRPSLLLDSRDGL
QQPPRIGEQIAIPIAKLLAPLLPGAYRPVHARAVALSLVKTVPATEGVVILSSSMLASIGSEP

Sequences:

>Translated_223_residues
MSTPIDQRKVLLAGATGLVGGLMLQALLADPTVAQVHALSRRPLRIRHPRLQVHIVDFSRLPALPQADEVYLALGTTIKV
AGSQAAFRAVDLEANLAVAKAAFAAGASRAGLVSAVGANAKSSTFYSRVKGELEDALRSLGLTTLVIGRPSLLLDSRDGL
QQPPRIGEQIAIPIAKLLAPLLPGAYRPVHARAVALSLVKTVPATEGVVILSSSMLASIGSEP
>Mature_222_residues
STPIDQRKVLLAGATGLVGGLMLQALLADPTVAQVHALSRRPLRIRHPRLQVHIVDFSRLPALPQADEVYLALGTTIKVA
GSQAAFRAVDLEANLAVAKAAFAAGASRAGLVSAVGANAKSSTFYSRVKGELEDALRSLGLTTLVIGRPSLLLDSRDGLQ
QPPRIGEQIAIPIAKLLAPLLPGAYRPVHARAVALSLVKTVPATEGVVILSSSMLASIGSEP

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI148728168, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI148728164, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI148728166, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI87082218, Length=214, Percent_Identity=40.6542056074766, Blast_Score=115, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71983631, Length=163, Percent_Identity=33.7423312883436, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 23208; Mature: 23077

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPIDQRKVLLAGATGLVGGLMLQALLADPTVAQVHALSRRPLRIRHPRLQVHIVDFSR
CCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCEEEEEEECHHH
LPALPQADEVYLALGTTIKVAGSQAAFRAVDLEANLAVAKAAFAAGASRAGLVSAVGANA
CCCCCCCCCEEEEECCEEEECCCCHHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHCCCC
KSSTFYSRVKGELEDALRSLGLTTLVIGRPSLLLDSRDGLQQPPRIGEQIAIPIAKLLAP
CHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
LLPGAYRPVHARAVALSLVKTVPATEGVVILSSSMLASIGSEP
HCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCC
>Mature Secondary Structure 
STPIDQRKVLLAGATGLVGGLMLQALLADPTVAQVHALSRRPLRIRHPRLQVHIVDFSR
CCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCEEEEEEECHHH
LPALPQADEVYLALGTTIKVAGSQAAFRAVDLEANLAVAKAAFAAGASRAGLVSAVGANA
CCCCCCCCCEEEEECCEEEECCCCHHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHCCCC
KSSTFYSRVKGELEDALRSLGLTTLVIGRPSLLLDSRDGLQQPPRIGEQIAIPIAKLLAP
CHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
LLPGAYRPVHARAVALSLVKTVPATEGVVILSSSMLASIGSEP
HCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]