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The map label for this gene is yfdE [H]

Identifier: 94313198

GI number: 94313198

Start: 863025

End: 863735

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_4272

Alternate gene names: 94313198

Gene position: 863025-863735 (Clockwise)

Preceding gene: 94313196

Following gene: 94313199

Centisome position: 33.45

GC content: 65.68

Gene sequence:

>711_bases
ATGCCACTTGAGGGTGTGCGGGTGGTCGAGCTCGGATCGCTGATCGCTGGCCCCTACGCAGCCGGACTGCTGGCGCAGTT
CGGTGCCGACGTGCTGAAGATCGAGCCGCCGCAGGACGGCGACCCGCTGCGCAGATGGCGCAAGCTGCATGACGGGACTT
CGCTGTGGTGGTACGGCCAGAGCAGGAACAAGAAATCCATCACACTGGATCGGCGTTCGGCGGCGGGTCAGGAAATCCTG
CGCAGCCTCGTGGCAGAGGCCGATATCGTGATTGAGAATTTCCGCCCCGGCACGCTCGAGAAATGGGGTCTGGGCTGGGA
AGACCTACGTGCCGTCAACCCGACGCTCGCCATGGTACGGGTGTCGGGCTACGGGCAGACCGGCCCCTACAAGGATCGCC
CCGGCTTCGCGGCGATTGCGGAGTCGATGGGCGGGTTGCGCTACGTGCCGGGCTATCCGGATCGTTCGCCGGTGCGCTCG
GGAGTGAGCATCGGCGACACGCTGGCTTCGCTCTACGGTGTGATCGGTGCGTTGCTGGCAATGCACCACCCGCGCGCAAA
TGGTAGCGACGGGCAGTTCATCGACGTGGCGCTATATGAGTCGGTGTTCGCGGTGATGGAGATAGTGGGGCACGATGTCT
CGGGGCAGGTGCTCAAGGCCGGCAAGCGCTCCGAACTCCATCCCGCGCCGCCTGTCGGCGCGGGGCGATGA

Upstream 100 bases:

>100_bases
CTTGGGCGGATGCCCTTTTTACGAACGAGACAGTTGTGGGAGGTAGCTGAATGACCCAAGCCGGAAACATGTCCGACAGC
AAGCCCGAGGCTGGGCAGCC

Downstream 100 bases:

>100_bases
CCTGATGACCATGACCTGACCAAGAGGAGACCATAAGCATGGTGCAAGCCAATCCACCAGCCAGCCTGCTCGACAAGCTG
TGGGCCAGCCACGTGATTCA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MPLEGVRVVELGSLIAGPYAAGLLAQFGADVLKIEPPQDGDPLRRWRKLHDGTSLWWYGQSRNKKSITLDRRSAAGQEIL
RSLVAEADIVIENFRPGTLEKWGLGWEDLRAVNPTLAMVRVSGYGQTGPYKDRPGFAAIAESMGGLRYVPGYPDRSPVRS
GVSIGDTLASLYGVIGALLAMHHPRANGSDGQFIDVALYESVFAVMEIVGHDVSGQVLKAGKRSELHPAPPVGAGR

Sequences:

>Translated_236_residues
MPLEGVRVVELGSLIAGPYAAGLLAQFGADVLKIEPPQDGDPLRRWRKLHDGTSLWWYGQSRNKKSITLDRRSAAGQEIL
RSLVAEADIVIENFRPGTLEKWGLGWEDLRAVNPTLAMVRVSGYGQTGPYKDRPGFAAIAESMGGLRYVPGYPDRSPVRS
GVSIGDTLASLYGVIGALLAMHHPRANGSDGQFIDVALYESVFAVMEIVGHDVSGQVLKAGKRSELHPAPPVGAGR
>Mature_235_residues
PLEGVRVVELGSLIAGPYAAGLLAQFGADVLKIEPPQDGDPLRRWRKLHDGTSLWWYGQSRNKKSITLDRRSAAGQEILR
SLVAEADIVIENFRPGTLEKWGLGWEDLRAVNPTLAMVRVSGYGQTGPYKDRPGFAAIAESMGGLRYVPGYPDRSPVRSG
VSIGDTLASLYGVIGALLAMHHPRANGSDGQFIDVALYESVFAVMEIVGHDVSGQVLKAGKRSELHPAPPVGAGR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863124, Length=224, Percent_Identity=37.5, Blast_Score=147, Evalue=9e-36,
Organism=Homo sapiens, GI300863128, Length=224, Percent_Identity=37.5, Blast_Score=147, Evalue=9e-36,
Organism=Homo sapiens, GI300863126, Length=151, Percent_Identity=39.7350993377483, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI266458393, Length=201, Percent_Identity=31.3432835820896, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI266458397, Length=201, Percent_Identity=30.8457711442786, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI42794625, Length=201, Percent_Identity=30.8457711442786, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI266456254, Length=201, Percent_Identity=30.8457711442786, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI266458395, Length=130, Percent_Identity=36.9230769230769, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI42822893, Length=130, Percent_Identity=37.6923076923077, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI87082093, Length=206, Percent_Identity=36.4077669902913, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1788717, Length=208, Percent_Identity=32.6923076923077, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786222, Length=204, Percent_Identity=31.3725490196078, Blast_Score=73, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=216, Percent_Identity=29.6296296296296, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=216, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24648431, Length=233, Percent_Identity=37.7682403433476, Blast_Score=158, Evalue=3e-39,
Organism=Drosophila melanogaster, GI24585488, Length=205, Percent_Identity=30.7317073170732, Blast_Score=93, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 25411; Mature: 25280

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLEGVRVVELGSLIAGPYAAGLLAQFGADVLKIEPPQDGDPLRRWRKLHDGTSLWWYGQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECC
SRNKKSITLDRRSAAGQEILRSLVAEADIVIENFRPGTLEKWGLGWEDLRAVNPTLAMVR
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHCCCHHHHHHCCCEEEEEE
VSGYGQTGPYKDRPGFAAIAESMGGLRYVPGYPDRSPVRSGVSIGDTLASLYGVIGALLA
ECCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
MHHPRANGSDGQFIDVALYESVFAVMEIVGHDVSGQVLKAGKRSELHPAPPVGAGR
HCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PLEGVRVVELGSLIAGPYAAGLLAQFGADVLKIEPPQDGDPLRRWRKLHDGTSLWWYGQ
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECC
SRNKKSITLDRRSAAGQEILRSLVAEADIVIENFRPGTLEKWGLGWEDLRAVNPTLAMVR
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHCCCHHHHHHCCCEEEEEE
VSGYGQTGPYKDRPGFAAIAESMGGLRYVPGYPDRSPVRSGVSIGDTLASLYGVIGALLA
ECCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
MHHPRANGSDGQFIDVALYESVFAVMEIVGHDVSGQVLKAGKRSELHPAPPVGAGR
HCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]