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The map label for this gene is omp

Identifier: 94313148

GI number: 94313148

Start: 805896

End: 806984

Strand: Direct

Name: omp

Synonym: Rmet_4221

Alternate gene names: NA

Gene position: 805896-806984 (Clockwise)

Preceding gene: 94313147

Following gene: 94313149

Centisome position: 31.24

GC content: 62.26

Gene sequence:

>1089_bases
ATGAAGGCGAGATTGACAGTTCCCGCACTCGCAGCATTGCCGTGCTGCGTTTCGGCGGAATCCCGGGCAAACGTGACCCT
CTACGGCGTCGTGGACGCAGGCGTGAGCTTCACCAACAACCAGGTGGGCGGAGGCAGCGTGGTCAGGCAGACGTCGGGCA
GCCTTTCCAGTTCGCGCTGGGGCGTACGCGGATCCGAGGACCTTGGCCAAGGGCTGAAAGCGGTGTTCGTGCTCGAAAGT
GGCTTTGATGTCGACACTGGCAAATCAGCGCAGGGCGGACGGCTGTTCGGGCGATCGGCATATGTGGGGTTGGAGAGCCA
ATGGGGCAGCATCCTGTTTGGGCGTCAGCAGAGCGCGTTGTTCGACATGATCGGCGCGTTCGACCCGATGGCGCTGTCGC
CGAGGTGGTCCATCTTCAATCAGGATCTTGCCCTGGTCGCCCGGCCGGATAACACCATGAAGTACGTGGGGAAGTTCGGC
GGCTTGACGGCAACGGCGATGTACAGCTTTGGCGCGGAAAGTACCACGGTGGATGGCAGCGAGGTGCCTGGGAATGCCAA
GCTAGGTCGGGAGTTCGGCTTTCGCCTGAGCTACAACAGTGGTCCGTTCAGCATTGGCACGGCCTATGACGAGGTCAACA
CCGGCACATTGACCACGAACCGCGACGCCACGTCGCGTCGGGCCACGGTGGCCGGTACCTATGCGCTTTCCACCCTCAAG
GTGTTCGCCGGCTACCGATGGGCAAAGGCCTACGATGGAGCGATTCTCGTGGGTGCGCTGCCAGGTGTGTCGAATCAAGC
GTCGAACCTGTGGTGGACTGGCGTGATGTGGCAGGCGGGGCCGGCGGTGACGCTTAGCGCGGCCGCTTATTACCAGGATT
TCCGCAACACCGGTGGTGACCCGTGGCTGTTCGTCGCCACGGGCCGGTACGCATTCTCGAAGCGTACCGAGGCCTACCTG
ACGCTGGGCTATGCACTGAATCAGGAGAACTCGAACATGGGTCTTGGCAATGGCGCGGCCGGCTTCGGTCACACGCCGCC
GGGCAGCAATCAGTTCGGCACGACCCTCGGGATAAAGCACATTTTCTGA

Upstream 100 bases:

>100_bases
AAGGCGTGAAGCGTTCCCGCTCAAGCGGGAGCGCGTCCACACGCCATGACCTGGCCAGCCTCAGCCAGAAATTGAGGCAT
TTCCAACTTGGAGGAAAAGA

Downstream 100 bases:

>100_bases
CATAGATCATTGTGTGGACGGGGCCTTCAACGACATGGCACTTGGTGCCCCGTCATCATTGCCAAATGAGATGTCCTTGT
CCACGCGCAAATCATCGGGC

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MKARLTVPALAALPCCVSAESRANVTLYGVVDAGVSFTNNQVGGGSVVRQTSGSLSSSRWGVRGSEDLGQGLKAVFVLES
GFDVDTGKSAQGGRLFGRSAYVGLESQWGSILFGRQQSALFDMIGAFDPMALSPRWSIFNQDLALVARPDNTMKYVGKFG
GLTATAMYSFGAESTTVDGSEVPGNAKLGREFGFRLSYNSGPFSIGTAYDEVNTGTLTTNRDATSRRATVAGTYALSTLK
VFAGYRWAKAYDGAILVGALPGVSNQASNLWWTGVMWQAGPAVTLSAAAYYQDFRNTGGDPWLFVATGRYAFSKRTEAYL
TLGYALNQENSNMGLGNGAAGFGHTPPGSNQFGTTLGIKHIF

Sequences:

>Translated_362_residues
MKARLTVPALAALPCCVSAESRANVTLYGVVDAGVSFTNNQVGGGSVVRQTSGSLSSSRWGVRGSEDLGQGLKAVFVLES
GFDVDTGKSAQGGRLFGRSAYVGLESQWGSILFGRQQSALFDMIGAFDPMALSPRWSIFNQDLALVARPDNTMKYVGKFG
GLTATAMYSFGAESTTVDGSEVPGNAKLGREFGFRLSYNSGPFSIGTAYDEVNTGTLTTNRDATSRRATVAGTYALSTLK
VFAGYRWAKAYDGAILVGALPGVSNQASNLWWTGVMWQAGPAVTLSAAAYYQDFRNTGGDPWLFVATGRYAFSKRTEAYL
TLGYALNQENSNMGLGNGAAGFGHTPPGSNQFGTTLGIKHIF
>Mature_362_residues
MKARLTVPALAALPCCVSAESRANVTLYGVVDAGVSFTNNQVGGGSVVRQTSGSLSSSRWGVRGSEDLGQGLKAVFVLES
GFDVDTGKSAQGGRLFGRSAYVGLESQWGSILFGRQQSALFDMIGAFDPMALSPRWSIFNQDLALVARPDNTMKYVGKFG
GLTATAMYSFGAESTTVDGSEVPGNAKLGREFGFRLSYNSGPFSIGTAYDEVNTGTLTTNRDATSRRATVAGTYALSTLK
VFAGYRWAKAYDGAILVGALPGVSNQASNLWWTGVMWQAGPAVTLSAAAYYQDFRNTGGDPWLFVATGRYAFSKRTEAYL
TLGYALNQENSNMGLGNGAAGFGHTPPGSNQFGTTLGIKHIF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 38262; Mature: 38262

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARLTVPALAALPCCVSAESRANVTLYGVVDAGVSFTNNQVGGGSVVRQTSGSLSSSRW
CCCEECCCHHHHCCCEECCCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCCCCCCCCC
GVRGSEDLGQGLKAVFVLESGFDVDTGKSAQGGRLFGRSAYVGLESQWGSILFGRQQSAL
CCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCEEECCEEEEEECCCCCCEEECCCHHHH
FDMIGAFDPMALSPRWSIFNQDLALVARPDNTMKYVGKFGGLTATAMYSFGAESTTVDGS
HHHHHCCCCCCCCCCCEEECCCEEEEECCCCHHHHHHHHCCEEEEEEEECCCCCCCCCCC
EVPGNAKLGREFGFRLSYNSGPFSIGTAYDEVNTGTLTTNRDATSRRATVAGTYALSTLK
CCCCCCCCCHHHCCEEEECCCCCEEECCCCCCCCCEEEECCCCCCCCEEEEEHHHHHHHH
VFAGYRWAKAYDGAILVGALPGVSNQASNLWWTGVMWQAGPAVTLSAAAYYQDFRNTGGD
HHHCCEEHHHCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEHHHHHHHHHHHCCCC
PWLFVATGRYAFSKRTEAYLTLGYALNQENSNMGLGNGAAGFGHTPPGSNQFGTTLGIKH
CEEEEEECCEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEE
IF
CC
>Mature Secondary Structure
MKARLTVPALAALPCCVSAESRANVTLYGVVDAGVSFTNNQVGGGSVVRQTSGSLSSSRW
CCCEECCCHHHHCCCEECCCCCCCEEEEEEEECCCEECCCCCCCCCEEEECCCCCCCCCC
GVRGSEDLGQGLKAVFVLESGFDVDTGKSAQGGRLFGRSAYVGLESQWGSILFGRQQSAL
CCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCEEECCEEEEEECCCCCCEEECCCHHHH
FDMIGAFDPMALSPRWSIFNQDLALVARPDNTMKYVGKFGGLTATAMYSFGAESTTVDGS
HHHHHCCCCCCCCCCCEEECCCEEEEECCCCHHHHHHHHCCEEEEEEEECCCCCCCCCCC
EVPGNAKLGREFGFRLSYNSGPFSIGTAYDEVNTGTLTTNRDATSRRATVAGTYALSTLK
CCCCCCCCCHHHCCEEEECCCCCEEECCCCCCCCCEEEECCCCCCCCEEEEEHHHHHHHH
VFAGYRWAKAYDGAILVGALPGVSNQASNLWWTGVMWQAGPAVTLSAAAYYQDFRNTGGD
HHHCCEEHHHCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEHHHHHHHHHHHCCCC
PWLFVATGRYAFSKRTEAYLTLGYALNQENSNMGLGNGAAGFGHTPPGSNQFGTTLGIKH
CEEEEEECCEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEE
IF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]