Click here to switch to the map view.

The map label for this gene is pdxR [H]

Identifier: 94313044

GI number: 94313044

Start: 687583

End: 688878

Strand: Reverse

Name: pdxR [H]

Synonym: Rmet_4117

Alternate gene names: 94313044

Gene position: 688878-687583 (Counterclockwise)

Preceding gene: 94313045

Following gene: 94313043

Centisome position: 26.7

GC content: 65.9

Gene sequence:

>1296_bases
ATGAAAATACACGGCAAGACCGCCGCGGAGATCTTCGACTGTGTACGCACCCTGACGCAGTCCCGGCAACTGCTCCCCGG
AACGTCTCTTCCCCCCGTACGCGACCTGGCCCTGGAACTGGGCATCAATCGGAACACGGTGGCCGCGGCCTACAAGCGCC
TCGCCATGGCGGGCATTGCCGTGACGCAGGGGCGGCTTGGCACGATCATCCGCGACCAGTACGAGCCGGGTGAGCAGGAA
GGCACGCTGGCGGGCAGCCCCCTGACCGATCTTGCCAGCGGCAATCCGAATATCGAGTGGCTGCCGGATATCTCGGCCGC
ACTGCAGAGCCGCCCCTACAAGCCGCGGCTCTATGGCGAACCCACTGTCAATGCCGGGCTGGAAGCGTATGCGCGGAAAT
GGTTCGAGCCCGACTGCCCCGCGCCTTTCGAAGTCAATCTGGCGCATGGCGCCGTCGATGCCATCGAGCGGCTGCTCAAC
GCGTATCTGGTGGCTGGGGACAAGGTAGCGGTCGAGAATCCCTGCTTCCTGAGCAGCATCAACACGCTGCGCGCCATCGG
GCTGCAGCCGATTGGCGTGCCCATGGATGCGGAAGGCATCCAGGCAGAAGGTCTGGCAAGCGCCCTTGCCAAGGGGGCTC
AGGCTGTCATCCTGACGCCGCGCGCGCACAACCCGACGGGCTGCTGCCTGAGCGAGAAGCGGGCGCGGGCAATCTCGCGA
TTACTGGCAAAGCATCCCAATGTGCCGGTGATCGTGGACGACCATTTCGCCCTGCTCTCTGGCGCCGCCTATCACCCGGT
GATACCGCGCAGCACCTATCGCTGGGCCGTGGTGCGGTCCTTCACCAAGGCACTGGGCCCCGATCTTCGGGTCGCCGCGG
TTGCCAGCGATGTGGCCACATCCCGGCAGCTACGCTTGTGCCTGGCGCCCGGAACAAGCTGGGTCAGCCACCTTCTGCAG
GACATCGTCGAGGTCACCGTCACCCGCCCCGAGACCATCAGGCTGATCGACAAGGCCCGGAACGACTACGCCCGACGCCG
GCAGGCGATGGAGCAGGCGCTGGATGCTCAGGGCATCGGGCACATGGCGCAGGGCGATGGCTTCAACCTCTGGGTGCCCT
TGCAGTGCGACGATCAGGCCATCGCCCTGGCACTGGCCCGGCAAGGCTGGCTGGTCCGGCAAGGGAGCGTTTTCTCCGTG
CAGGATGGCGTGCGGGGCCTGCGCATCACGATTTCCGCCATCGAACCGGCACAATGCGAACGGCTGGCGCAGGACATCAG
GCGCAGCCTTGGGTAG

Upstream 100 bases:

>100_bases
ATGTCCGGGCATGTCAGAATGACGCCCTCGGGCAAGATCGGGCAAGATCGGACTGGATGAATCCTGGCTTTCCCGCACAC
ATCGACTGTCCTGGCACCCA

Downstream 100 bases:

>100_bases
ATCGCCGCCGCCACGGAGGCAATACAGTGATTCCCTGCCGTAACAACGATACCTCGCGACGATACCGGGCAGAAACGGTA
CAAACGGGATCGTTCCACAT

Product: transcriptional regulatory protein PtsJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MKIHGKTAAEIFDCVRTLTQSRQLLPGTSLPPVRDLALELGINRNTVAAAYKRLAMAGIAVTQGRLGTIIRDQYEPGEQE
GTLAGSPLTDLASGNPNIEWLPDISAALQSRPYKPRLYGEPTVNAGLEAYARKWFEPDCPAPFEVNLAHGAVDAIERLLN
AYLVAGDKVAVENPCFLSSINTLRAIGLQPIGVPMDAEGIQAEGLASALAKGAQAVILTPRAHNPTGCCLSEKRARAISR
LLAKHPNVPVIVDDHFALLSGAAYHPVIPRSTYRWAVVRSFTKALGPDLRVAAVASDVATSRQLRLCLAPGTSWVSHLLQ
DIVEVTVTRPETIRLIDKARNDYARRRQAMEQALDAQGIGHMAQGDGFNLWVPLQCDDQAIALALARQGWLVRQGSVFSV
QDGVRGLRITISAIEPAQCERLAQDIRRSLG

Sequences:

>Translated_431_residues
MKIHGKTAAEIFDCVRTLTQSRQLLPGTSLPPVRDLALELGINRNTVAAAYKRLAMAGIAVTQGRLGTIIRDQYEPGEQE
GTLAGSPLTDLASGNPNIEWLPDISAALQSRPYKPRLYGEPTVNAGLEAYARKWFEPDCPAPFEVNLAHGAVDAIERLLN
AYLVAGDKVAVENPCFLSSINTLRAIGLQPIGVPMDAEGIQAEGLASALAKGAQAVILTPRAHNPTGCCLSEKRARAISR
LLAKHPNVPVIVDDHFALLSGAAYHPVIPRSTYRWAVVRSFTKALGPDLRVAAVASDVATSRQLRLCLAPGTSWVSHLLQ
DIVEVTVTRPETIRLIDKARNDYARRRQAMEQALDAQGIGHMAQGDGFNLWVPLQCDDQAIALALARQGWLVRQGSVFSV
QDGVRGLRITISAIEPAQCERLAQDIRRSLG
>Mature_431_residues
MKIHGKTAAEIFDCVRTLTQSRQLLPGTSLPPVRDLALELGINRNTVAAAYKRLAMAGIAVTQGRLGTIIRDQYEPGEQE
GTLAGSPLTDLASGNPNIEWLPDISAALQSRPYKPRLYGEPTVNAGLEAYARKWFEPDCPAPFEVNLAHGAVDAIERLLN
AYLVAGDKVAVENPCFLSSINTLRAIGLQPIGVPMDAEGIQAEGLASALAKGAQAVILTPRAHNPTGCCLSEKRARAISR
LLAKHPNVPVIVDDHFALLSGAAYHPVIPRSTYRWAVVRSFTKALGPDLRVAAVASDVATSRQLRLCLAPGTSWVSHLLQ
DIVEVTVTRPETIRLIDKARNDYARRRQAMEQALDAQGIGHMAQGDGFNLWVPLQCDDQAIALALARQGWLVRQGSVFSV
QDGVRGLRITISAIEPAQCERLAQDIRRSLG

Specific function: Putative transcriptional regulator of the ptsHI/crr operon [H]

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=282, Percent_Identity=29.0780141843972, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787710, Length=423, Percent_Identity=26.0047281323877, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 46610; Mature: 46610

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIHGKTAAEIFDCVRTLTQSRQLLPGTSLPPVRDLALELGINRNTVAAAYKRLAMAGIA
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VTQGRLGTIIRDQYEPGEQEGTLAGSPLTDLASGNPNIEWLPDISAALQSRPYKPRLYGE
CCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEECCCHHHHHHCCCCCCCCCCC
PTVNAGLEAYARKWFEPDCPAPFEVNLAHGAVDAIERLLNAYLVAGDKVAVENPCFLSSI
CCCCCCHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHH
NTLRAIGLQPIGVPMDAEGIQAEGLASALAKGAQAVILTPRAHNPTGCCLSEKRARAISR
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
LLAKHPNVPVIVDDHFALLSGAAYHPVIPRSTYRWAVVRSFTKALGPDLRVAAVASDVAT
HHHCCCCCCEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHC
SRQLRLCLAPGTSWVSHLLQDIVEVTVTRPETIRLIDKARNDYARRRQAMEQALDAQGIG
CCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HMAQGDGFNLWVPLQCDDQAIALALARQGWLVRQGSVFSVQDGVRGLRITISAIEPAQCE
CCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEECCCEEECCCCCCEEEEEEEECCHHHHH
RLAQDIRRSLG
HHHHHHHHHCC
>Mature Secondary Structure
MKIHGKTAAEIFDCVRTLTQSRQLLPGTSLPPVRDLALELGINRNTVAAAYKRLAMAGIA
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VTQGRLGTIIRDQYEPGEQEGTLAGSPLTDLASGNPNIEWLPDISAALQSRPYKPRLYGE
CCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEECCCHHHHHHCCCCCCCCCCC
PTVNAGLEAYARKWFEPDCPAPFEVNLAHGAVDAIERLLNAYLVAGDKVAVENPCFLSSI
CCCCCCHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHH
NTLRAIGLQPIGVPMDAEGIQAEGLASALAKGAQAVILTPRAHNPTGCCLSEKRARAISR
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
LLAKHPNVPVIVDDHFALLSGAAYHPVIPRSTYRWAVVRSFTKALGPDLRVAAVASDVAT
HHHCCCCCCEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHC
SRQLRLCLAPGTSWVSHLLQDIVEVTVTRPETIRLIDKARNDYARRRQAMEQALDAQGIG
CCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HMAQGDGFNLWVPLQCDDQAIALALARQGWLVRQGSVFSVQDGVRGLRITISAIEPAQCE
CCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEECCCEEECCCCCCEEEEEEEECCHHHHH
RLAQDIRRSLG
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7612925; 11677609 [H]