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The map label for this gene is psd [H]

Identifier: 94313043

GI number: 94313043

Start: 686559

End: 687413

Strand: Reverse

Name: psd [H]

Synonym: Rmet_4116

Alternate gene names: 94313043

Gene position: 687413-686559 (Counterclockwise)

Preceding gene: 94313044

Following gene: 94313036

Centisome position: 26.64

GC content: 64.56

Gene sequence:

>855_bases
ATGTCCTTCTCGGTCCTGCTGCAACGCCTCGCCCCGCTACACCTGCTGACCCGTATCGCAGGTCAACTGGCGGATTGCCG
CCAGCCCTGGCTCGCCCAGTACCTGATCCGCACGTTCGTGCGCCGGCACAAGATCGACCTCGATGAGGCATTGGTCAGCG
ACCTCGCCACCTATCCGACGTTCAACGAGTTCTTTATCCGCGCGCTGCGCCCCGGCGCGCGCCCGATCGCCGCAGCAGAC
TGGACCAGCCCGGTGGACGGCACGATCAGCCAGATTGGGCGCGTCGAAGCTGGCCAGATGATCCATGCCAAGCAACATGC
CTATAGCGCCACCGCGTTGCTGGGGGATGCCGCCCTCGCGAAACAGCTGGAGGGCGGGTGCTTTTCCACGGTGTACCTGA
GCCCCCGTAACTACCACCGGATTCACATGCCGTGCGAGGGGCGCCTGCTGGGCATGCGTCATGTGCCCGGCAAGCTGTAC
TCCGTCAGGCCCGATATCGTTGAAGGCATCGACGGACTGCTCGCCATCAATGAGCGTCTGGTTTGCTGGTTCGAGCATCC
GCAGCACGGCGTCTTTGCGCTGGTGCTCGTGGGTGCTGCCATCGTCGGGCGCATCGCCACGGTCTGGCATGGCCTGGTGG
AGCCCAAGCGATCCGGGCAAGTCTCGGAGTGGCACTACGCCGACGGCGCTTCCGCACCTCAACTGAAGGATCTGCTTCAG
GGTGTGGAGATGGGGCACTTCCAGCTCGGCTCGACGATTGTGCTGCTGATGCCGGGATCGGCATGGCAATACCATCCTGA
CTGGCAGGTCGGACAGCCGGTGCGGCTGGGTCAGGCAATTGCCAGCCGCGGCTGA

Upstream 100 bases:

>100_bases
CAGAAACGGTACAAACGGGATCGTTCCACATTAGAATTCTGCCCCATGAAACAATCAGCGGCCCGATGCGTTGCACCGGG
TCGCCCCAACGCCCGCCTCC

Downstream 100 bases:

>100_bases
ATCGCCCCGCAATCGCTCCTCAATCGCCCCACAACCGCCCCACGCACCTGACCGATTTCAGCCCCGGGGGTGCTCGTCCA
GGGAAGTCTTGACGAACAGC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSFSVLLQRLAPLHLLTRIAGQLADCRQPWLAQYLIRTFVRRHKIDLDEALVSDLATYPTFNEFFIRALRPGARPIAAAD
WTSPVDGTISQIGRVEAGQMIHAKQHAYSATALLGDAALAKQLEGGCFSTVYLSPRNYHRIHMPCEGRLLGMRHVPGKLY
SVRPDIVEGIDGLLAINERLVCWFEHPQHGVFALVLVGAAIVGRIATVWHGLVEPKRSGQVSEWHYADGASAPQLKDLLQ
GVEMGHFQLGSTIVLLMPGSAWQYHPDWQVGQPVRLGQAIASRG

Sequences:

>Translated_284_residues
MSFSVLLQRLAPLHLLTRIAGQLADCRQPWLAQYLIRTFVRRHKIDLDEALVSDLATYPTFNEFFIRALRPGARPIAAAD
WTSPVDGTISQIGRVEAGQMIHAKQHAYSATALLGDAALAKQLEGGCFSTVYLSPRNYHRIHMPCEGRLLGMRHVPGKLY
SVRPDIVEGIDGLLAINERLVCWFEHPQHGVFALVLVGAAIVGRIATVWHGLVEPKRSGQVSEWHYADGASAPQLKDLLQ
GVEMGHFQLGSTIVLLMPGSAWQYHPDWQVGQPVRLGQAIASRG
>Mature_283_residues
SFSVLLQRLAPLHLLTRIAGQLADCRQPWLAQYLIRTFVRRHKIDLDEALVSDLATYPTFNEFFIRALRPGARPIAAADW
TSPVDGTISQIGRVEAGQMIHAKQHAYSATALLGDAALAKQLEGGCFSTVYLSPRNYHRIHMPCEGRLLGMRHVPGKLYS
VRPDIVEGIDGLLAINERLVCWFEHPQHGVFALVLVGAAIVGRIATVWHGLVEPKRSGQVSEWHYADGASAPQLKDLLQG
VEMGHFQLGSTIVLLMPGSAWQYHPDWQVGQPVRLGQAIASRG

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=307, Percent_Identity=29.6416938110749, Blast_Score=119, Evalue=4e-27,
Organism=Escherichia coli, GI1790604, Length=263, Percent_Identity=44.8669201520913, Blast_Score=217, Evalue=8e-58,
Organism=Caenorhabditis elegans, GI71980843, Length=284, Percent_Identity=33.0985915492958, Blast_Score=140, Evalue=8e-34,
Organism=Caenorhabditis elegans, GI71980840, Length=283, Percent_Identity=32.8621908127208, Blast_Score=139, Evalue=1e-33,
Organism=Saccharomyces cerevisiae, GI6321609, Length=237, Percent_Identity=26.5822784810127, Blast_Score=86, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6324160, Length=164, Percent_Identity=32.3170731707317, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24649526, Length=301, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24649528, Length=301, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24649524, Length=301, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 31376; Mature: 31245

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSVLLQRLAPLHLLTRIAGQLADCRQPWLAQYLIRTFVRRHKIDLDEALVSDLATYPT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
FNEFFIRALRPGARPIAAADWTSPVDGTISQIGRVEAGQMIHAKQHAYSATALLGDAALA
HHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KQLEGGCFSTVYLSPRNYHRIHMPCEGRLLGMRHVPGKLYSVRPDIVEGIDGLLAINERL
HHHCCCCEEEEEECCCCCEEEECCCCCCEECCCCCCCCCEECCHHHHHHHHHHEECCCEE
VCWFEHPQHGVFALVLVGAAIVGRIATVWHGLVEPKRSGQVSEWHYADGASAPQLKDLLQ
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHH
GVEMGHFQLGSTIVLLMPGSAWQYHPDWQVGQPVRLGQAIASRG
HHHCCCEEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SFSVLLQRLAPLHLLTRIAGQLADCRQPWLAQYLIRTFVRRHKIDLDEALVSDLATYPT
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
FNEFFIRALRPGARPIAAADWTSPVDGTISQIGRVEAGQMIHAKQHAYSATALLGDAALA
HHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KQLEGGCFSTVYLSPRNYHRIHMPCEGRLLGMRHVPGKLYSVRPDIVEGIDGLLAINERL
HHHCCCCEEEEEECCCCCEEEECCCCCCEECCCCCCCCCEECCHHHHHHHHHHEECCCEE
VCWFEHPQHGVFALVLVGAAIVGRIATVWHGLVEPKRSGQVSEWHYADGASAPQLKDLLQ
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHH
GVEMGHFQLGSTIVLLMPGSAWQYHPDWQVGQPVRLGQAIASRG
HHHCCCEEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA