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The map label for this gene is bcd [H]

Identifier: 94313002

GI number: 94313002

Start: 641910

End: 643070

Strand: Direct

Name: bcd [H]

Synonym: Rmet_4074

Alternate gene names: 94313002

Gene position: 641910-643070 (Clockwise)

Preceding gene: 94313001

Following gene: 94313003

Centisome position: 24.88

GC content: 67.27

Gene sequence:

>1161_bases
TTGAGTTCACTGTTTGGCGCGTTCTCGCTGACATCCCTGCCGCCTGAGGCGTTGGCGTTCCGGCGCGAGGTGAAGGCATT
CCTGGCCGAGCATCTGCCGGATCTTCCCGCCGATGTTCGCGCGCGATCGTGGATGGGATTCGACGCCGCGTTCAGCCGCG
CGCTTGCGCAGCGTGGGTGGGTCGGCGTCACGCTGCCGGCGCGGTTCGGTGGCGCGGGGCTCGATGCGTTCTCGCGTTTC
GTGCTGGTGGAGGAACTGCTTGCCTGCGGCGCGCCGGTTTCCGCGCACTGGATTGCCGATCGCCAGAGTGGCCCGTTGAT
CCTGCGCTACGGCAGCGATGCGCAACGCGAGTTCTATCTGCCGCGTATCTGCCGGGGCGAGGCCTTCTTCTGCATTGGCA
TGAGCGAGCCCAATTCGGGGTCCGATCTGGCCAGCGTGGCCACGCGTGCGGTGCCACAGCCAGGTGGCGGCTGGCGCCTG
AACGGCCGCAAGATCTGGACGACCAACGCGGATCGCTGCCACTACATGCTCGCGCTGGTGCGAACGTCTGGCGAGGCCGG
AGACCGGCAGAAGGGGTTGTCGCAGGTGATTGTCGACCTGTCTCTGCCGGGCGTGACGGTTCGGCCGATTCATGATCTGG
CCGGTGATGCCCATTTCTCGGAGGTCAGCTTCGAGGACGTGCTGCTGCCCGCCGATGCGCTGATCGGCAACGAAGGCGCG
GGCTGGGAACAGGTCAACGCGGAACTGGCATTCGAGCGCAGCGGCCCCGAGCGGCTGTACTCCAGCGTGGTGTTGCTCGA
TGCCTGGGTGGCTGCGCTCCGTCGCCTGCCTGCGGTGCGCCGCGATGCAGTCACAATCGGCGGGATCGTCGGCCGGCTGG
CCACGCTACGGGCGATGTCCGTGGCCGTGACCGCGCGGCTGGCTGCCGGAGAAAGCCCGTTGGTGGAGGCAGCATTGGTC
AAGGATCTCGGCACCGGACTGGAGCAGTCGATCGGCGCGTTGGCCGAAGCGGCGCTGGGCGATGACCCGGAGCTGGCGAT
GGACGCGGAGCTCTATCGCACCGCTGCCTATGTCAGTCAGATTTCGCCGACCTATTCGCTGCGCGGTGGTACGCGAGAGA
TCCTCCGGGGCATGATCGCCCGCGGCCTGGGCCTTCGCTAA

Upstream 100 bases:

>100_bases
GTCGGAAATCGACCGTTGGCACAAAGTGGTCAAGGACACCGGCGTGACGCTGGATTGAAGAGGCATCAGGCGCTCACCGG
GCGCTTACGGAGGTACCGTT

Downstream 100 bases:

>100_bases
GAGGCGCTATCAAAAAGATTCTGGCGTCGTTGCGCGGCCTTGGGCAGTCCACTTGTACTGTCTGCGGCCGCGCGTCTAGC
CAGAACCGCTTCGCTTCAAT

Product: acyl-CoA dehydrogenase-like protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MSSLFGAFSLTSLPPEALAFRREVKAFLAEHLPDLPADVRARSWMGFDAAFSRALAQRGWVGVTLPARFGGAGLDAFSRF
VLVEELLACGAPVSAHWIADRQSGPLILRYGSDAQREFYLPRICRGEAFFCIGMSEPNSGSDLASVATRAVPQPGGGWRL
NGRKIWTTNADRCHYMLALVRTSGEAGDRQKGLSQVIVDLSLPGVTVRPIHDLAGDAHFSEVSFEDVLLPADALIGNEGA
GWEQVNAELAFERSGPERLYSSVVLLDAWVAALRRLPAVRRDAVTIGGIVGRLATLRAMSVAVTARLAAGESPLVEAALV
KDLGTGLEQSIGALAEAALGDDPELAMDAELYRTAAYVSQISPTYSLRGGTREILRGMIARGLGLR

Sequences:

>Translated_386_residues
MSSLFGAFSLTSLPPEALAFRREVKAFLAEHLPDLPADVRARSWMGFDAAFSRALAQRGWVGVTLPARFGGAGLDAFSRF
VLVEELLACGAPVSAHWIADRQSGPLILRYGSDAQREFYLPRICRGEAFFCIGMSEPNSGSDLASVATRAVPQPGGGWRL
NGRKIWTTNADRCHYMLALVRTSGEAGDRQKGLSQVIVDLSLPGVTVRPIHDLAGDAHFSEVSFEDVLLPADALIGNEGA
GWEQVNAELAFERSGPERLYSSVVLLDAWVAALRRLPAVRRDAVTIGGIVGRLATLRAMSVAVTARLAAGESPLVEAALV
KDLGTGLEQSIGALAEAALGDDPELAMDAELYRTAAYVSQISPTYSLRGGTREILRGMIARGLGLR
>Mature_385_residues
SSLFGAFSLTSLPPEALAFRREVKAFLAEHLPDLPADVRARSWMGFDAAFSRALAQRGWVGVTLPARFGGAGLDAFSRFV
LVEELLACGAPVSAHWIADRQSGPLILRYGSDAQREFYLPRICRGEAFFCIGMSEPNSGSDLASVATRAVPQPGGGWRLN
GRKIWTTNADRCHYMLALVRTSGEAGDRQKGLSQVIVDLSLPGVTVRPIHDLAGDAHFSEVSFEDVLLPADALIGNEGAG
WEQVNAELAFERSGPERLYSSVVLLDAWVAALRRLPAVRRDAVTIGGIVGRLATLRAMSVAVTARLAAGESPLVEAALVK
DLGTGLEQSIGALAEAALGDDPELAMDAELYRTAAYVSQISPTYSLRGGTREILRGMIARGLGLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=389, Percent_Identity=25.4498714652956, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI226958414, Length=347, Percent_Identity=26.2247838616715, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI4501857, Length=394, Percent_Identity=25.6345177664975, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI4557233, Length=258, Percent_Identity=27.906976744186, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI4501859, Length=238, Percent_Identity=27.3109243697479, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI4557235, Length=215, Percent_Identity=29.3023255813954, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI76496475, Length=201, Percent_Identity=29.8507462686567, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI7656849, Length=247, Percent_Identity=28.7449392712551, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI21361497, Length=195, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI4557231, Length=210, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI187960098, Length=210, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI38505218, Length=187, Percent_Identity=27.807486631016, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI4503943, Length=161, Percent_Identity=30.4347826086957, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI7669494, Length=161, Percent_Identity=30.4347826086957, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI48976061, Length=218, Percent_Identity=27.5229357798165, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI211971008, Length=218, Percent_Identity=27.5229357798165, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081958, Length=205, Percent_Identity=30.7317073170732, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1786223, Length=281, Percent_Identity=25.9786476868327, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081702, Length=306, Percent_Identity=24.1830065359477, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17538396, Length=393, Percent_Identity=25.1908396946565, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17506239, Length=235, Percent_Identity=28.5106382978723, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17505929, Length=204, Percent_Identity=32.3529411764706, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17508101, Length=190, Percent_Identity=28.9473684210526, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71985184, Length=199, Percent_Identity=31.1557788944724, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71985192, Length=199, Percent_Identity=31.1557788944724, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17551932, Length=205, Percent_Identity=30.2439024390244, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17570075, Length=254, Percent_Identity=27.1653543307087, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI32563615, Length=187, Percent_Identity=31.0160427807487, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71990804, Length=279, Percent_Identity=25.4480286738351, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17534899, Length=215, Percent_Identity=28.8372093023256, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71982178, Length=206, Percent_Identity=26.6990291262136, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17562446, Length=194, Percent_Identity=26.2886597938144, Blast_Score=68, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21355753, Length=350, Percent_Identity=25.7142857142857, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI281363737, Length=222, Percent_Identity=30.6306306306306, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24666513, Length=244, Percent_Identity=27.4590163934426, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21356377, Length=196, Percent_Identity=29.5918367346939, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24660351, Length=189, Percent_Identity=30.1587301587302, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24646207, Length=193, Percent_Identity=25.3886010362694, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 41288; Mature: 41156

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLFGAFSLTSLPPEALAFRREVKAFLAEHLPDLPADVRARSWMGFDAAFSRALAQRGW
CCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCC
VGVTLPARFGGAGLDAFSRFVLVEELLACGAPVSAHWIADRQSGPLILRYGSDAQREFYL
EEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECCCCCHHCCC
PRICRGEAFFCIGMSEPNSGSDLASVATRAVPQPGGGWRLNGRKIWTTNADRCHYMLALV
CCEECCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEECCEEEEECCCCHHHHHHHHH
RTSGEAGDRQKGLSQVIVDLSLPGVTVRPIHDLAGDAHFSEVSFEDVLLPADALIGNEGA
HCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCHHHHEECHHHHCCCCCC
GWEQVNAELAFERSGPERLYSSVVLLDAWVAALRRLPAVRRDAVTIGGIVGRLATLRAMS
CHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VAVTARLAAGESPLVEAALVKDLGTGLEQSIGALAEAALGDDPELAMDAELYRTAAYVSQ
HHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ISPTYSLRGGTREILRGMIARGLGLR
CCCCEECCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSLFGAFSLTSLPPEALAFRREVKAFLAEHLPDLPADVRARSWMGFDAAFSRALAQRGW
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCC
VGVTLPARFGGAGLDAFSRFVLVEELLACGAPVSAHWIADRQSGPLILRYGSDAQREFYL
EEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECCCCCHHCCC
PRICRGEAFFCIGMSEPNSGSDLASVATRAVPQPGGGWRLNGRKIWTTNADRCHYMLALV
CCEECCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEECCEEEEECCCCHHHHHHHHH
RTSGEAGDRQKGLSQVIVDLSLPGVTVRPIHDLAGDAHFSEVSFEDVLLPADALIGNEGA
HCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCHHHHEECHHHHCCCCCC
GWEQVNAELAFERSGPERLYSSVVLLDAWVAALRRLPAVRRDAVTIGGIVGRLATLRAMS
CHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VAVTARLAAGESPLVEAALVKDLGTGLEQSIGALAEAALGDDPELAMDAELYRTAAYVSQ
HHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ISPTYSLRGGTREILRGMIARGLGLR
CCCCEECCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]