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The map label for this gene is cycL [H]

Identifier: 94312982

GI number: 94312982

Start: 620454

End: 621488

Strand: Reverse

Name: cycL [H]

Synonym: Rmet_4054

Alternate gene names: 94312982

Gene position: 621488-620454 (Counterclockwise)

Preceding gene: 94312983

Following gene: 94312981

Centisome position: 24.09

GC content: 70.05

Gene sequence:

>1035_bases
GTGCCTAGAACCTGGCTCTCCACGCTGACGCTGCTGATCGCGCTCCATGCCGGGGCGGCATTCGCGCTGACGGATGCGGA
ACTCGACGCGCGCGTGCTGGCGCTCTCCTCGCAGCTTCGGTGCCTGGTCTGCCAGAACCAGACACTGGCTGATTCGAACG
CCGACCTGGCCGTCGACCTGCGCCGCCAGATCCGGGCCCAGATGGCGCAAGGGGCCAGCGACGACGCGATCAAGACCTAT
CTGGTGCAGCGCTACGGCGACTTCGTGCTCTACAAGCCGCCGTTCAAGCCGCAGACGTGGCTGCTGTGGCTCGGCCCCTT
CCTCCTGCTCATGGCGGTGCTGGCCTGGCTCTGGCGCGGCAGGCGCCGCCAGATGGCCGCAGGCAATGCCGTGGAGGAGA
CGGAGCGGGACATGCAATCGCCCGCGCGCCGCCAGTCGCTGCTGACCAATGCGATGCTGTTTACCGTGTTGCCACCGGTG
GCCGTCGCGCTGTATCTGCACCTGGGCTCGCCAGTATCGCTGCTCGGGTCTGCGGTGGCGCACGATGGACCTCATGGCCC
CGATGGCGAGGTCACCTTGACGGCGGCCCGCGTCGAGGACATGGTCGACCAGCTCGCCGCGCGCCTGCGCAAGAATCCGA
ACGACGCCGAGGGCTGGGTCATGCTGGGGCGTTCGTACACCGTGCTCGAACGCAACGACGACGCGGCGGAAGCATTCGCC
CGCGCGGTGGCGCTGGAGCCGAAGGTGGCGTCGCTGCGTTCCGACTACGCGGACGTGCTGGCCAGCGTCAACGGCGGATC
GCTGGAAGGCCCGGCGATGGCACAGATCGACGCCGCGCTGCGGCTCGACCCCGACGACCCGAAGGGGCTGGCGCTGGCCG
CCAGCGCCGCGGCCGAACGCGGCGACAAGGCCGGCGCGATCGCCTACTGGGAGCACCTGTACCGGCTGCTGCCCCCGGAT
TCGCAGACCGCCGGCCGGGTCGCCGCCAATCTGGCGGCCGCCCGGTCGGTAGCGGAACCCGGACAGCGCAAATAG

Upstream 100 bases:

>100_bases
GCGGGCGTGGTGCGCTATCGCCAGGTCGGCCCGGTCACGCAGCAGGTTCTCGAACAGAAGCTGCTGCCACTCCTGAAATC
GCTCGAAAACGGGGGCAGCC

Downstream 100 bases:

>100_bases
CGCCATTCACGGCCGTGCGGCCACACCTGGCACATGTCACGGGTGGCGACCTCACGGCATCGTAGAATGGCTGCTGGCTT
GCGCTTAAGGATTCCACCAT

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MPRTWLSTLTLLIALHAGAAFALTDAELDARVLALSSQLRCLVCQNQTLADSNADLAVDLRRQIRAQMAQGASDDAIKTY
LVQRYGDFVLYKPPFKPQTWLLWLGPFLLLMAVLAWLWRGRRRQMAAGNAVEETERDMQSPARRQSLLTNAMLFTVLPPV
AVALYLHLGSPVSLLGSAVAHDGPHGPDGEVTLTAARVEDMVDQLAARLRKNPNDAEGWVMLGRSYTVLERNDDAAEAFA
RAVALEPKVASLRSDYADVLASVNGGSLEGPAMAQIDAALRLDPDDPKGLALAASAAAERGDKAGAIAYWEHLYRLLPPD
SQTAGRVAANLAAARSVAEPGQRK

Sequences:

>Translated_344_residues
MPRTWLSTLTLLIALHAGAAFALTDAELDARVLALSSQLRCLVCQNQTLADSNADLAVDLRRQIRAQMAQGASDDAIKTY
LVQRYGDFVLYKPPFKPQTWLLWLGPFLLLMAVLAWLWRGRRRQMAAGNAVEETERDMQSPARRQSLLTNAMLFTVLPPV
AVALYLHLGSPVSLLGSAVAHDGPHGPDGEVTLTAARVEDMVDQLAARLRKNPNDAEGWVMLGRSYTVLERNDDAAEAFA
RAVALEPKVASLRSDYADVLASVNGGSLEGPAMAQIDAALRLDPDDPKGLALAASAAAERGDKAGAIAYWEHLYRLLPPD
SQTAGRVAANLAAARSVAEPGQRK
>Mature_343_residues
PRTWLSTLTLLIALHAGAAFALTDAELDARVLALSSQLRCLVCQNQTLADSNADLAVDLRRQIRAQMAQGASDDAIKTYL
VQRYGDFVLYKPPFKPQTWLLWLGPFLLLMAVLAWLWRGRRRQMAAGNAVEETERDMQSPARRQSLLTNAMLFTVLPPVA
VALYLHLGSPVSLLGSAVAHDGPHGPDGEVTLTAARVEDMVDQLAARLRKNPNDAEGWVMLGRSYTVLERNDDAAEAFAR
AVALEPKVASLRSDYADVLASVNGGSLEGPAMAQIDAALRLDPDDPKGLALAASAAAERGDKAGAIAYWEHLYRLLPPDS
QTAGRVAANLAAARSVAEPGQRK

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=361, Percent_Identity=29.3628808864266, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790512, Length=67, Percent_Identity=47.7611940298507, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 37139; Mature: 37008

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTWLSTLTLLIALHAGAAFALTDAELDARVLALSSQLRCLVCQNQTLADSNADLAVDL
CCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHH
RRQIRAQMAQGASDDAIKTYLVQRYGDFVLYKPPFKPQTWLLWLGPFLLLMAVLAWLWRG
HHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
RRRQMAAGNAVEETERDMQSPARRQSLLTNAMLFTVLPPVAVALYLHLGSPVSLLGSAVA
CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
HDGPHGPDGEVTLTAARVEDMVDQLAARLRKNPNDAEGWVMLGRSYTVLERNDDAAEAFA
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCHHHHHHH
RAVALEPKVASLRSDYADVLASVNGGSLEGPAMAQIDAALRLDPDDPKGLALAASAAAER
HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHEEECCCCCCCEEEEHHHHHHC
GDKAGAIAYWEHLYRLLPPDSQTAGRVAANLAAARSVAEPGQRK
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PRTWLSTLTLLIALHAGAAFALTDAELDARVLALSSQLRCLVCQNQTLADSNADLAVDL
CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHH
RRQIRAQMAQGASDDAIKTYLVQRYGDFVLYKPPFKPQTWLLWLGPFLLLMAVLAWLWRG
HHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
RRRQMAAGNAVEETERDMQSPARRQSLLTNAMLFTVLPPVAVALYLHLGSPVSLLGSAVA
CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
HDGPHGPDGEVTLTAARVEDMVDQLAARLRKNPNDAEGWVMLGRSYTVLERNDDAAEAFA
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCHHHHHHH
RAVALEPKVASLRSDYADVLASVNGGSLEGPAMAQIDAALRLDPDDPKGLALAASAAAER
HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHEEECCCCCCCEEEEHHHHHHC
GDKAGAIAYWEHLYRLLPPDSQTAGRVAANLAAARSVAEPGQRK
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]