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The map label for this gene is ygeA [H]

Identifier: 94312931

GI number: 94312931

Start: 574794

End: 575522

Strand: Direct

Name: ygeA [H]

Synonym: Rmet_4003

Alternate gene names: 94312931

Gene position: 574794-575522 (Clockwise)

Preceding gene: 291481504

Following gene: 94312932

Centisome position: 22.28

GC content: 60.63

Gene sequence:

>729_bases
ATGAAAACAATAGGACTGATTGGCGGCATGAGCTGGGAGTCGTCGGCCGAGTACTACCGGCTGATCAACCAGGGGATGAA
GGCCCGCCTGGGCGGACACAGGAATGCCCGTAGCGTCATGGTCACTGTCTGCTTCGAAGAGGTCAAAACGTTACAGCACG
CGGAGCGATGGGAGGACTTGGGAAACCAGATGCAGCAGGCGGCACGCCAGGTCGAAGCCGGCGGCGCCGATTTTGTCGTG
CTTTGCACGAACACAATGCACAAGCTGGCCCCCGCTATTGAAGCGGTGCTCGACGTGCCCTTCCTGCATATCGTCGACCC
GACCGCGGACGCGCTGCGCCGTGCCGGTATCGAACGGGTCGGCCTGCTCGGCACGCGATTTACCATGGAGCAGGATTTTT
ACCGCGCCCGAATGGAACAGCGCCATGGTATCCAGGTTGTGATACCGGATCAGGATGACCGTACGCTTGTGCACGACGTC
ATCTACGACGAGCTTTGTCACGGCGTCGTGCGGAGTGAATCGCGCGCAGTCTATCAGCGCATCATTGAATCGCTGAAAGC
CGGTGGTGCGCAGGGCGTGATTCTCGGCTGCACGGAAATCACGTTGCTGATCAAGCCCGAGGATTCGGCATTGCCGACAT
TCGATACCACCGAGCTACATGCCATGGCAGCGGTGGCGCTTGCAGCCGGGGAGGTGGCCAGGTGGCCTGAGGCGCTTCTG
CCCGGATAG

Upstream 100 bases:

>100_bases
CGATCCGAGGTTTCTCGGCGAAGATGCAGAGGTTTCTCCACGGCACTCGGGGGTGATTTGTCCATGCTTGAGCGGAGATG
AAAGCAAAGGGATGCGCAGG

Downstream 100 bases:

>100_bases
ATGCGACGCTCCAAGATGGACTTGTCACCCGGATTCGAACGTTCTCTATGTTGTTGCGTCAGGGGGCGTTTTATTCTCGG
GCCTGTCCGCGCCGAATGGC

Product: putative aspartate racemase

Products: D-aspartate

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKTIGLIGGMSWESSAEYYRLINQGMKARLGGHRNARSVMVTVCFEEVKTLQHAERWEDLGNQMQQAARQVEAGGADFVV
LCTNTMHKLAPAIEAVLDVPFLHIVDPTADALRRAGIERVGLLGTRFTMEQDFYRARMEQRHGIQVVIPDQDDRTLVHDV
IYDELCHGVVRSESRAVYQRIIESLKAGGAQGVILGCTEITLLIKPEDSALPTFDTTELHAMAAVALAAGEVARWPEALL
PG

Sequences:

>Translated_242_residues
MKTIGLIGGMSWESSAEYYRLINQGMKARLGGHRNARSVMVTVCFEEVKTLQHAERWEDLGNQMQQAARQVEAGGADFVV
LCTNTMHKLAPAIEAVLDVPFLHIVDPTADALRRAGIERVGLLGTRFTMEQDFYRARMEQRHGIQVVIPDQDDRTLVHDV
IYDELCHGVVRSESRAVYQRIIESLKAGGAQGVILGCTEITLLIKPEDSALPTFDTTELHAMAAVALAAGEVARWPEALL
PG
>Mature_242_residues
MKTIGLIGGMSWESSAEYYRLINQGMKARLGGHRNARSVMVTVCFEEVKTLQHAERWEDLGNQMQQAARQVEAGGADFVV
LCTNTMHKLAPAIEAVLDVPFLHIVDPTADALRRAGIERVGLLGTRFTMEQDFYRARMEQRHGIQVVIPDQDDRTLVHDV
IYDELCHGVVRSESRAVYQRIIESLKAGGAQGVILGCTEITLLIKPEDSALPTFDTTELHAMAAVALAAGEVARWPEALL
PG

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=227, Percent_Identity=50.6607929515419, Blast_Score=236, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: 5.1.1.13

Molecular weight: Translated: 26708; Mature: 26708

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00923 ASP_GLU_RACEMASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIGLIGGMSWESSAEYYRLINQGMKARLGGHRNARSVMVTVCFEEVKTLQHAERWEDL
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GNQMQQAARQVEAGGADFVVLCTNTMHKLAPAIEAVLDVPFLHIVDPTADALRRAGIERV
HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCHHEEECCCHHHHHHCCHHHH
GLLGTRFTMEQDFYRARMEQRHGIQVVIPDQDDRTLVHDVIYDELCHGVVRSESRAVYQR
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIESLKAGGAQGVILGCTEITLLIKPEDSALPTFDTTELHAMAAVALAAGEVARWPEALL
HHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHC
PG
CC
>Mature Secondary Structure
MKTIGLIGGMSWESSAEYYRLINQGMKARLGGHRNARSVMVTVCFEEVKTLQHAERWEDL
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GNQMQQAARQVEAGGADFVVLCTNTMHKLAPAIEAVLDVPFLHIVDPTADALRRAGIERV
HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCHHEEECCCHHHHHHCCHHHH
GLLGTRFTMEQDFYRARMEQRHGIQVVIPDQDDRTLVHDVIYDELCHGVVRSESRAVYQR
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIESLKAGGAQGVILGCTEITLLIKPEDSALPTFDTTELHAMAAVALAAGEVARWPEALL
HHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHC
PG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-aspartate

Specific reaction: L-aspartate = D-aspartate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]