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The map label for this gene is rpoK [H]

Identifier: 94312929

GI number: 94312929

Start: 572637

End: 573146

Strand: Reverse

Name: rpoK [H]

Synonym: Rmet_4001

Alternate gene names: 94312929

Gene position: 573146-572637 (Counterclockwise)

Preceding gene: 94312930

Following gene: 94312928

Centisome position: 22.21

GC content: 64.31

Gene sequence:

>510_bases
ATGGCCGCCGACGCTGGCCCACATCACGATATCCAAGCGCTCTACAGCTGCCACCATCGCTGGCTGCTCGGCTGGCTGCA
TCGGAAGATCGGCTGCTGGCACCGCTCAGCCGATCTCGCACATGACACCTTCATGCGTCTGCTGGCGCGTGAGGAAGCCC
TGGCGATCGCCGAACCCCGCGCGTTCCTGACGACCGTCGCCCAACGGGTGCTGGCCAACCAGTGGCGACGCGAGAAGCTC
GAGCAGGCGTATCTGGAAGCCCTCGCCAGCCGGCCGGCCGCACTGGCTCCTTCCGAGGAAGAACGCGCGATCCTGCTGGA
AACCCTCAACGACATCGCTGAACGGCTCGACGGATTGCCTGTGGTGGTCAAGCGCGCGTTCCTGATGGCGCAGCTCGAAG
GCCAGAGCCAGGCCGAAATTGCTTCCGCCTTGCGAATCTCGGTGACGACGGTCAAGCGCTATCTGGTTCGCGCCGGCACA
AAGTGCTATTTCGCGATGTCCCTCGCATGA

Upstream 100 bases:

>100_bases
CTCCGAGCATTGCATGACTTCGCGGCAATCCATACAATAACGATTCTCATTTACAAGCAATCTAACCTCCGCCGGCCCAT
CGGGCGACAAGGAATGGACG

Downstream 100 bases:

>100_bases
GCGCGCAAGATCTGGGGATACCACCGCACGTGGCACTCGCCGCAGTGGAATGGTTGGTAACGCTGCAAGGCGGTGAAACG
GATGGGGCATCCCACGCCGC

Product: RNA polymerase sigma K factor (ECF:FecI-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MAADAGPHHDIQALYSCHHRWLLGWLHRKIGCWHRSADLAHDTFMRLLAREEALAIAEPRAFLTTVAQRVLANQWRREKL
EQAYLEALASRPAALAPSEEERAILLETLNDIAERLDGLPVVVKRAFLMAQLEGQSQAEIASALRISVTTVKRYLVRAGT
KCYFAMSLA

Sequences:

>Translated_169_residues
MAADAGPHHDIQALYSCHHRWLLGWLHRKIGCWHRSADLAHDTFMRLLAREEALAIAEPRAFLTTVAQRVLANQWRREKL
EQAYLEALASRPAALAPSEEERAILLETLNDIAERLDGLPVVVKRAFLMAQLEGQSQAEIASALRISVTTVKRYLVRAGT
KCYFAMSLA
>Mature_168_residues
AADAGPHHDIQALYSCHHRWLLGWLHRKIGCWHRSADLAHDTFMRLLAREEALAIAEPRAFLTTVAQRVLANQWRREKLE
QAYLEALASRPAALAPSEEERAILLETLNDIAERLDGLPVVVKRAFLMAQLEGQSQAEIASALRISVTTVKRYLVRAGTK
CYFAMSLA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=152, Percent_Identity=44.078947368421, Blast_Score=135, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19027; Mature: 18896

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADAGPHHDIQALYSCHHRWLLGWLHRKIGCWHRSADLAHDTFMRLLAREEALAIAEPR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHH
AFLTTVAQRVLANQWRREKLEQAYLEALASRPAALAPSEEERAILLETLNDIAERLDGLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
VVVKRAFLMAQLEGQSQAEIASALRISVTTVKRYLVRAGTKCYFAMSLA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECC
>Mature Secondary Structure 
AADAGPHHDIQALYSCHHRWLLGWLHRKIGCWHRSADLAHDTFMRLLAREEALAIAEPR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHH
AFLTTVAQRVLANQWRREKLEQAYLEALASRPAALAPSEEERAILLETLNDIAERLDGLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
VVVKRAFLMAQLEGQSQAEIASALRISVTTVKRYLVRAGTKCYFAMSLA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]