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The map label for this gene is yfdE [H]

Identifier: 94312739

GI number: 94312739

Start: 349916

End: 351106

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_3809

Alternate gene names: 94312739

Gene position: 351106-349916 (Counterclockwise)

Preceding gene: 94312740

Following gene: 94312732

Centisome position: 13.61

GC content: 65.32

Gene sequence:

>1191_bases
GTGCCCCCTGCAGTTCTTCCCCTGGAAGGCGTCACCGTCGTCGCGCTGGAACATGCCGTCGCCGCCCCGTTCGCCAGCCG
TCAGCTTGCCGATCTTGGCGCGCGCGTCGTCAAGATCGAACGCCCTGGTGTCGGCGATTTCGCGCGCGGCTACGATAAGA
CCGTGCACGGCATGTCGTCGTTCTTCGTCTGGGCCAACCGGGGCAAGGAAAGCCTGTCGCTCGATCTGAAGCATCCCGAC
GCGGCAGACATCCTTCAGCAATTGCTTGACGAGGCTGACGTGTTGATCCAGAACCTCGCGCCCGGCGCCGCCGACCGGCT
CGGGCTAGGCTTCGACGCGCTGCACACCCGCTTTCCAAAGCTGATCGTGTGCGACATATCGGGCTATGGCGACCACGGCC
CATATCGCGACAAGAAGGCCTACGACTTGCTGATCCAGGCGGCGGCCGGTCTGATATCGGTCACCGGCGGGGAGGACGCG
CCGTCGCGCGCCGGGATCTCGATCGCCGACATCGCGGCCGGCATGTACGCCTACTCGGGCATTCTCTCGGCGCTGCTGCT
GCGTGCCCGCACCGGCGTGGGCGAGCGCGTGGAAGTCACCATGCTGGAAGCGCTCGGCGAGTGGATGTCGTATCCGCTGA
ACTTCGCGCACTATGGCGGCACACCGCCCGCCCGGCATGGCCTGGCGCATCCCTCGATTGCACCTTACGGCCACTATCGC
ACCGGCGACGGCGGCAGCGTGATCTTCGGACTGCAGAACGATCGGGAGTGGCAGCGCTTCTGTCTGAACGTTCTCGACGA
TGCGGCCCTGGCGAACGACCCACGCTTCACGACGAACCTGGAACGCGTGAACCATCGCGAGGCGCTGGACGTGGAAATCG
GCAAGCACCTGAACCGGATGACACGCGACGAACTGATCGAACGTCTCGATCAAGGCGGCATTGCGAACGCACCGCTGAAC
GACATGCACGACGTCTGGAACCATCCGCAACTGGCAGCGCGGCAACGCTGGCGTGACGTTGCGACGCCAGCCGGATCGAT
CCAGGCCCTGTTGCCGCCCGCCACACTGACGAACGCGCCAGCGCGCATGGGTGACGTGCCGGATCTTGGAGAACACACTG
CCGCCATTCTGGGCAAGCTCGGATACACCGCGGCGCAACTGGAAGCGCTACGCCAGCAAGGGGCGATCTAG

Upstream 100 bases:

>100_bases
TTGAAGCCGTGTAAGGAAATATCGACTGGCTTCGTCACACACGTCACTCCATACTCGGCCATCCCGGACGCCGTGCGTCC
CACGCCTAATGGAGCCCGCC

Downstream 100 bases:

>100_bases
CACCACGCAAGAAAACCGGCAGTGCCTTGCACTGCCGGTTTTTTTAAGGCTTGTTTTACAGAATGCCCTTGGCGCGCAAG
TCCGCGACTTCGTCGGAACC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MPPAVLPLEGVTVVALEHAVAAPFASRQLADLGARVVKIERPGVGDFARGYDKTVHGMSSFFVWANRGKESLSLDLKHPD
AADILQQLLDEADVLIQNLAPGAADRLGLGFDALHTRFPKLIVCDISGYGDHGPYRDKKAYDLLIQAAAGLISVTGGEDA
PSRAGISIADIAAGMYAYSGILSALLLRARTGVGERVEVTMLEALGEWMSYPLNFAHYGGTPPARHGLAHPSIAPYGHYR
TGDGGSVIFGLQNDREWQRFCLNVLDDAALANDPRFTTNLERVNHREALDVEIGKHLNRMTRDELIERLDQGGIANAPLN
DMHDVWNHPQLAARQRWRDVATPAGSIQALLPPATLTNAPARMGDVPDLGEHTAAILGKLGYTAAQLEALRQQGAI

Sequences:

>Translated_396_residues
MPPAVLPLEGVTVVALEHAVAAPFASRQLADLGARVVKIERPGVGDFARGYDKTVHGMSSFFVWANRGKESLSLDLKHPD
AADILQQLLDEADVLIQNLAPGAADRLGLGFDALHTRFPKLIVCDISGYGDHGPYRDKKAYDLLIQAAAGLISVTGGEDA
PSRAGISIADIAAGMYAYSGILSALLLRARTGVGERVEVTMLEALGEWMSYPLNFAHYGGTPPARHGLAHPSIAPYGHYR
TGDGGSVIFGLQNDREWQRFCLNVLDDAALANDPRFTTNLERVNHREALDVEIGKHLNRMTRDELIERLDQGGIANAPLN
DMHDVWNHPQLAARQRWRDVATPAGSIQALLPPATLTNAPARMGDVPDLGEHTAAILGKLGYTAAQLEALRQQGAI
>Mature_395_residues
PPAVLPLEGVTVVALEHAVAAPFASRQLADLGARVVKIERPGVGDFARGYDKTVHGMSSFFVWANRGKESLSLDLKHPDA
ADILQQLLDEADVLIQNLAPGAADRLGLGFDALHTRFPKLIVCDISGYGDHGPYRDKKAYDLLIQAAAGLISVTGGEDAP
SRAGISIADIAAGMYAYSGILSALLLRARTGVGERVEVTMLEALGEWMSYPLNFAHYGGTPPARHGLAHPSIAPYGHYRT
GDGGSVIFGLQNDREWQRFCLNVLDDAALANDPRFTTNLERVNHREALDVEIGKHLNRMTRDELIERLDQGGIANAPLND
MHDVWNHPQLAARQRWRDVATPAGSIQALLPPATLTNAPARMGDVPDLGEHTAAILGKLGYTAAQLEALRQQGAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=382, Percent_Identity=30.8900523560209, Blast_Score=209, Evalue=2e-54,
Organism=Homo sapiens, GI300863124, Length=330, Percent_Identity=32.4242424242424, Blast_Score=205, Evalue=8e-53,
Organism=Homo sapiens, GI13376042, Length=330, Percent_Identity=29.3939393939394, Blast_Score=165, Evalue=7e-41,
Organism=Homo sapiens, GI300863126, Length=381, Percent_Identity=28.3464566929134, Blast_Score=162, Evalue=5e-40,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=26.25, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=26.25, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458393, Length=246, Percent_Identity=32.1138211382114, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458397, Length=246, Percent_Identity=32.1138211382114, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=35.8620689655172, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=35.8620689655172, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI87082093, Length=330, Percent_Identity=35.7575757575758, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1788717, Length=415, Percent_Identity=29.1566265060241, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1786222, Length=413, Percent_Identity=25.90799031477, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=344, Percent_Identity=25.8720930232558, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=336, Percent_Identity=25.5952380952381, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=32.6633165829146, Blast_Score=207, Evalue=9e-54,
Organism=Drosophila melanogaster, GI24585488, Length=219, Percent_Identity=31.0502283105023, Blast_Score=102, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42671; Mature: 42540

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPAVLPLEGVTVVALEHAVAAPFASRQLADLGARVVKIERPGVGDFARGYDKTVHGMSS
CCCCCCCCCCEEEEEHHHHHHCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
FFVWANRGKESLSLDLKHPDAADILQQLLDEADVLIQNLAPGAADRLGLGFDALHTRFPK
HEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCE
LIVCDISGYGDHGPYRDKKAYDLLIQAAAGLISVTGGEDAPSRAGISIADIAAGMYAYSG
EEEEECCCCCCCCCCCCHHHHHHHHHHHHCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
ILSALLLRARTGVGERVEVTMLEALGEWMSYPLNFAHYGGTPPARHGLAHPSIAPYGHYR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCHHHCCCCCCCCCCCCCEE
TGDGGSVIFGLQNDREWQRFCLNVLDDAALANDPRFTTNLERVNHREALDVEIGKHLNRM
ECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHH
TRDELIERLDQGGIANAPLNDMHDVWNHPQLAARQRWRDVATPAGSIQALLPPATLTNAP
HHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCHHHCCCC
ARMGDVPDLGEHTAAILGKLGYTAAQLEALRQQGAI
HHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PPAVLPLEGVTVVALEHAVAAPFASRQLADLGARVVKIERPGVGDFARGYDKTVHGMSS
CCCCCCCCCEEEEEHHHHHHCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
FFVWANRGKESLSLDLKHPDAADILQQLLDEADVLIQNLAPGAADRLGLGFDALHTRFPK
HEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCE
LIVCDISGYGDHGPYRDKKAYDLLIQAAAGLISVTGGEDAPSRAGISIADIAAGMYAYSG
EEEEECCCCCCCCCCCCHHHHHHHHHHHHCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
ILSALLLRARTGVGERVEVTMLEALGEWMSYPLNFAHYGGTPPARHGLAHPSIAPYGHYR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCHHHCCCCCCCCCCCCCEE
TGDGGSVIFGLQNDREWQRFCLNVLDDAALANDPRFTTNLERVNHREALDVEIGKHLNRM
ECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHH
TRDELIERLDQGGIANAPLNDMHDVWNHPQLAARQRWRDVATPAGSIQALLPPATLTNAP
HHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCHHHCCCC
ARMGDVPDLGEHTAAILGKLGYTAAQLEALRQQGAI
HHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]