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The map label for this gene is yfdE [H]

Identifier: 94312721

GI number: 94312721

Start: 329739

End: 330962

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_3791

Alternate gene names: 94312721

Gene position: 330962-329739 (Counterclockwise)

Preceding gene: 94312722

Following gene: 94312720

Centisome position: 12.83

GC content: 62.5

Gene sequence:

>1224_bases
ATGATCAAGCCACTTTCCCATATTCGAGTACTGGACTTGACGCGTGTGCTGGCCGGGCCCTGGTGTACGCAGAATCTCGC
CGACCTGGGTGCGGAAGTTATCAAGGTGGAACGACCAGAAGTCGGCGACGAGACGCGCGGATGGGGACCACCATGGCTGC
CGGCCGCGGAAGAGTCCGAACGCCGCGACTCCAGCTACTACGCCTCAGCCAACCGCGGCAAGAAGTCGATTACCGTGAAC
CTTGCAAGTGCTGACGGCCAAGCGATCATCCGTCGCCTTGCGGCGAGCGCCGACGTGCTGGTCGAGAACTACAAGGTCGG
TACGCTCGCGCGCTACGGGCTGGGCTATGACGACCTACGAGAGGCCAATCCAGGTCTGGTGTACTGCTCCGTTACTGGCT
TCGGACAGACTGGGCCATACCGGCATCTTCCAGGCTACGACTTCGTCTTCCAGGGCATGGGTGGCCTGATGAGCATTACC
GGGGAGCGCGACGACCTGCCTGGCGGCGGTCCGCAGAAGGTCGGTATCGCGGTGGCCGACATTACAACTGGGATGTATGC
CAGCCTGGCCATAGCCGCCGCCCTCACATGGCGTGAGCGTAGCGGCCAGGGCCAGCATATCGATATGGCACTGCTCGATT
GCATGCTCGCCTTCAACAGCAATCAGGCCGTCAGCTACCTCGTCTCAGGCAAGCTTCCGAAACGGCAGGGCAACGCACAT
GCCAACGCCGTCCCCTATCAGGTCTTCGATAGTCTGGATGGCAAGCTCATTGTCGCCGTGGGCAACGATAGTCAGTTTGC
CGCCTATTGCCGCGCAGTCGGCAAGCCGGAGTTGGCCATCGACACACGTTTTGCCAAGGTGACCGGACGCATTGTCAACC
GCGAGGTGCTCCTGCCCATGCTGGTGGATGTGATGCGTACCGATTCCACCGCATCATGGCTTGCCCGACTCAAGGCTGCC
GGCGTGCCATGCGGCCCTGTCAACGACTTCAGCCAGACATTCGAGGACCCGCAGGTACGGCACCGCGGCATCCGCGTGGA
CCTGCCTCTACCGGATGGCGGCATTTGCCCGTCGATTGCGAGCCCGATGCGCTTCTCTGCCACGCCGCTTGAACACAGTG
CGGCGCCGCCAGCCCTGGGTGAGCACACTGACACCGTTCTGACGGAGTGTCTGGGCTTGCTACCTGCCGAACTTTCCCGC
CTGCGCGAGGCCGGGGCCATCTGA

Upstream 100 bases:

>100_bases
CGGAGGCTCCTTCGCCGCGTACCTGCGTGACGAGACCGCCCGCTACGGAAAGGTCATCGCTGACGCCCGCATACATGCCG
ACTGAACGCAACGTACAACC

Downstream 100 bases:

>100_bases
TTTCCGTATGCCCGGGACCGGGCGCGGATTGCATCCAACCTGTGCCAGTGAGATTTCCATATGTCCTTTGAACCCGACTA
CGCCGATTACGTTAGCCCCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MIKPLSHIRVLDLTRVLAGPWCTQNLADLGAEVIKVERPEVGDETRGWGPPWLPAAEESERRDSSYYASANRGKKSITVN
LASADGQAIIRRLAASADVLVENYKVGTLARYGLGYDDLREANPGLVYCSVTGFGQTGPYRHLPGYDFVFQGMGGLMSIT
GERDDLPGGGPQKVGIAVADITTGMYASLAIAAALTWRERSGQGQHIDMALLDCMLAFNSNQAVSYLVSGKLPKRQGNAH
ANAVPYQVFDSLDGKLIVAVGNDSQFAAYCRAVGKPELAIDTRFAKVTGRIVNREVLLPMLVDVMRTDSTASWLARLKAA
GVPCGPVNDFSQTFEDPQVRHRGIRVDLPLPDGGICPSIASPMRFSATPLEHSAAPPALGEHTDTVLTECLGLLPAELSR
LREAGAI

Sequences:

>Translated_407_residues
MIKPLSHIRVLDLTRVLAGPWCTQNLADLGAEVIKVERPEVGDETRGWGPPWLPAAEESERRDSSYYASANRGKKSITVN
LASADGQAIIRRLAASADVLVENYKVGTLARYGLGYDDLREANPGLVYCSVTGFGQTGPYRHLPGYDFVFQGMGGLMSIT
GERDDLPGGGPQKVGIAVADITTGMYASLAIAAALTWRERSGQGQHIDMALLDCMLAFNSNQAVSYLVSGKLPKRQGNAH
ANAVPYQVFDSLDGKLIVAVGNDSQFAAYCRAVGKPELAIDTRFAKVTGRIVNREVLLPMLVDVMRTDSTASWLARLKAA
GVPCGPVNDFSQTFEDPQVRHRGIRVDLPLPDGGICPSIASPMRFSATPLEHSAAPPALGEHTDTVLTECLGLLPAELSR
LREAGAI
>Mature_407_residues
MIKPLSHIRVLDLTRVLAGPWCTQNLADLGAEVIKVERPEVGDETRGWGPPWLPAAEESERRDSSYYASANRGKKSITVN
LASADGQAIIRRLAASADVLVENYKVGTLARYGLGYDDLREANPGLVYCSVTGFGQTGPYRHLPGYDFVFQGMGGLMSIT
GERDDLPGGGPQKVGIAVADITTGMYASLAIAAALTWRERSGQGQHIDMALLDCMLAFNSNQAVSYLVSGKLPKRQGNAH
ANAVPYQVFDSLDGKLIVAVGNDSQFAAYCRAVGKPELAIDTRFAKVTGRIVNREVLLPMLVDVMRTDSTASWLARLKAA
GVPCGPVNDFSQTFEDPQVRHRGIRVDLPLPDGGICPSIASPMRFSATPLEHSAAPPALGEHTDTVLTECLGLLPAELSR
LREAGAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=406, Percent_Identity=42.6108374384236, Blast_Score=333, Evalue=1e-91,
Organism=Homo sapiens, GI300863124, Length=432, Percent_Identity=40.0462962962963, Blast_Score=320, Evalue=2e-87,
Organism=Homo sapiens, GI300863126, Length=406, Percent_Identity=37.9310344827586, Blast_Score=281, Evalue=9e-76,
Organism=Homo sapiens, GI13376042, Length=432, Percent_Identity=35.8796296296296, Blast_Score=266, Evalue=3e-71,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=25.5, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=25.5, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=29.5454545454545, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI266458397, Length=264, Percent_Identity=29.5454545454545, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI266458395, Length=151, Percent_Identity=33.112582781457, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI42822893, Length=151, Percent_Identity=33.112582781457, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI87082093, Length=344, Percent_Identity=36.3372093023256, Blast_Score=246, Evalue=1e-66,
Organism=Escherichia coli, GI1788717, Length=429, Percent_Identity=31.002331002331, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI1786222, Length=395, Percent_Identity=23.7974683544304, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=263, Percent_Identity=25.8555133079848, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=232, Percent_Identity=27.5862068965517, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24648431, Length=404, Percent_Identity=45.049504950495, Blast_Score=346, Evalue=2e-95,
Organism=Drosophila melanogaster, GI24585488, Length=211, Percent_Identity=29.3838862559242, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43657; Mature: 43657

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKPLSHIRVLDLTRVLAGPWCTQNLADLGAEVIKVERPEVGDETRGWGPPWLPAAEESE
CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHEEECCCCCCCCCCCCCCCCCCCCCHHH
RRDSSYYASANRGKKSITVNLASADGQAIIRRLAASADVLVENYKVGTLARYGLGYDDLR
HCCCCEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHH
EANPGLVYCSVTGFGQTGPYRHLPGYDFVFQGMGGLMSITGERDDLPGGGPQKVGIAVAD
CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEEEH
ITTGMYASLAIAAALTWRERSGQGQHIDMALLDCMLAFNSNQAVSYLVSGKLPKRQGNAH
HHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
ANAVPYQVFDSLDGKLIVAVGNDSQFAAYCRAVGKPELAIDTRFAKVTGRIVNREVLLPM
CCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHH
LVDVMRTDSTASWLARLKAAGVPCGPVNDFSQTFEDPQVRHRGIRVDLPLPDGGICPSIA
HHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHCCEEEEECCCCCCCCCCCC
SPMRFSATPLEHSAAPPALGEHTDTVLTECLGLLPAELSRLREAGAI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKPLSHIRVLDLTRVLAGPWCTQNLADLGAEVIKVERPEVGDETRGWGPPWLPAAEESE
CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHEEECCCCCCCCCCCCCCCCCCCCCHHH
RRDSSYYASANRGKKSITVNLASADGQAIIRRLAASADVLVENYKVGTLARYGLGYDDLR
HCCCCEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHH
EANPGLVYCSVTGFGQTGPYRHLPGYDFVFQGMGGLMSITGERDDLPGGGPQKVGIAVAD
CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEEEH
ITTGMYASLAIAAALTWRERSGQGQHIDMALLDCMLAFNSNQAVSYLVSGKLPKRQGNAH
HHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
ANAVPYQVFDSLDGKLIVAVGNDSQFAAYCRAVGKPELAIDTRFAKVTGRIVNREVLLPM
CCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHH
LVDVMRTDSTASWLARLKAAGVPCGPVNDFSQTFEDPQVRHRGIRVDLPLPDGGICPSIA
HHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHCCEEEEECCCCCCCCCCCC
SPMRFSATPLEHSAAPPALGEHTDTVLTECLGLLPAELSRLREAGAI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]