Click here to switch to the map view.

The map label for this gene is cpaB

Identifier: 94312585

GI number: 94312585

Start: 187169

End: 188128

Strand: Direct

Name: cpaB

Synonym: Rmet_3653

Alternate gene names: NA

Gene position: 187169-188128 (Clockwise)

Preceding gene: 94312584

Following gene: 94312586

Centisome position: 7.25

GC content: 69.69

Gene sequence:

>960_bases
ATGAGCAGCAAACAGATACGGATCGTGGCGATTGTCCTGCTCGTGCTCGCCGGTCTGCTGGCATTGCTGGCGCTGCAGGC
GGCACGCCACACCGCCGCGCCGGCACCCGCGCAGGGCGTGGTGGCCACGCACGCCGTGGTGGTGACCACGCGCGCGGTGC
CAGCAGGCAAGCCGCTGCCGGCGGACGCGCTCCAGGTCCTGCAGTTGCCGATCGATCCGGGTGGCGCCTATCAGGACGTC
GCACGTGTTGCCGGCCAGGTGCCGCTGGTCAACCTCGGCGCCAACGTGCCGGTACTTGAAAGCCAGTTGCTGGCCGGGCT
GGCGCGTCAGATTCCGGACGGCGCGCGCGCGATGGCAGTGGCCGTGGACGAAGTGATCGGCGTCGGCAATCAGGTACAGC
CTGGCGACTTTGTCGACGTCTTCGTGGTCCTGCGGCGCGATAGCCAGGAGATTCCGCAAAGCCAGACGCGGATGTTGTTG
TCTCGCCTGCGGGTGCTGGCGTACGGCACCGGTGCGGTGAATGAAGCGCCGAAGCAGCAGGGCGAGCAGATGATGGCGCG
CCGTGAAGGCGCGAAAACGGCGGTGCTGTCGGTGCCGCTGGAGCAGGTTGGCACGCTGGTCATGGCGCAGCAGGCCGGCC
GCCTGATGCTCGCGCTGCGCAATCCGACTGACGAGGCGATGCCCAGCGACGGCATGTTCGCGGACCCACCGGGGGTGCTG
CAGGCCCGCGCGGGCGTGCCACCCGAAGCCCAGCGCGCGCCGGTGGACAAGGCTGTGGCGGGCGTGAGCCTCGCGGGGCT
GGTCGGTGAACCGCGTGCGCCCCAAACGCCCGCGCCAGCGATGCGGCCTGCCGCGCTTCCCACGGGACTCCCGGGGATGG
TCGCCACCGCACGGCGCGATCCCCAGAACGAAGGTAACGGCGTGGAAATGATCCGCGCCGGCAAGCGAGCGATTGAATAA

Upstream 100 bases:

>100_bases
TGGTCCAGCTATCTCCCGACATCTGAGCCTCGAGATCTGACATCCCCATGAACGACGGCCCGCATTTCATCCATCGACGC
AACCCGAGACAAGGCTTGGC

Downstream 100 bases:

>100_bases
CGGACGACACGGTATGCCGAAAAAGTTGAATCACCGTGTTCTGGCGCGACTGGTCGCGCTGACGATGCTGGCGCTGGCCG
CGGCGCCGATATCGCAAACG

Product: pilus assembly protein

Products: NA

Alternate protein names: Flp Pilus Assembly CpaB; Flp Pilus Assembly Protein; CpaB Family Flp Pilus Assembly Protein; Pilus Assembly Protein; Flp Pilus Assembly; Pilus Assembly Protein Cpab; Flp Type Pilus Assembly Protein; Signal Peptide Protein CpaB Like Protein; CpaB Pilus Assembly Protein; Signal Peptide Protein; Signal Peptide Protein CpaB Like; Transmembrane Fimbriae Assembly Protein; SAF Domain-Containing Protein

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSSKQIRIVAIVLLVLAGLLALLALQAARHTAAPAPAQGVVATHAVVVTTRAVPAGKPLPADALQVLQLPIDPGGAYQDV
ARVAGQVPLVNLGANVPVLESQLLAGLARQIPDGARAMAVAVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLL
SRLRVLAYGTGAVNEAPKQQGEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTDEAMPSDGMFADPPGVL
QARAGVPPEAQRAPVDKAVAGVSLAGLVGEPRAPQTPAPAMRPAALPTGLPGMVATARRDPQNEGNGVEMIRAGKRAIE

Sequences:

>Translated_319_residues
MSSKQIRIVAIVLLVLAGLLALLALQAARHTAAPAPAQGVVATHAVVVTTRAVPAGKPLPADALQVLQLPIDPGGAYQDV
ARVAGQVPLVNLGANVPVLESQLLAGLARQIPDGARAMAVAVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLL
SRLRVLAYGTGAVNEAPKQQGEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTDEAMPSDGMFADPPGVL
QARAGVPPEAQRAPVDKAVAGVSLAGLVGEPRAPQTPAPAMRPAALPTGLPGMVATARRDPQNEGNGVEMIRAGKRAIE
>Mature_318_residues
SSKQIRIVAIVLLVLAGLLALLALQAARHTAAPAPAQGVVATHAVVVTTRAVPAGKPLPADALQVLQLPIDPGGAYQDVA
RVAGQVPLVNLGANVPVLESQLLAGLARQIPDGARAMAVAVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLLS
RLRVLAYGTGAVNEAPKQQGEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTDEAMPSDGMFADPPGVLQ
ARAGVPPEAQRAPVDKAVAGVSLAGLVGEPRAPQTPAPAMRPAALPTGLPGMVATARRDPQNEGNGVEMIRAGKRAIE

Specific function: Unknown

COG id: COG3745

COG function: function code U; Flp pilus assembly protein CpaB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33012; Mature: 32881

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKQIRIVAIVLLVLAGLLALLALQAARHTAAPAPAQGVVATHAVVVTTRAVPAGKPLP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEEEECCCCCCCCC
ADALQVLQLPIDPGGAYQDVARVAGQVPLVNLGANVPVLESQLLAGLARQIPDGARAMAV
HHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHH
AVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLLSRLRVLAYGTGAVNEAPKQQ
HHHHHHCCCCCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTDEAMPSDGMFADPPGVL
HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHH
QARAGVPPEAQRAPVDKAVAGVSLAGLVGEPRAPQTPAPAMRPAALPTGLPGMVATARRD
HHCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
PQNEGNGVEMIRAGKRAIE
CCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SSKQIRIVAIVLLVLAGLLALLALQAARHTAAPAPAQGVVATHAVVVTTRAVPAGKPLP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEEEECCCCCCCCC
ADALQVLQLPIDPGGAYQDVARVAGQVPLVNLGANVPVLESQLLAGLARQIPDGARAMAV
HHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHH
AVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLLSRLRVLAYGTGAVNEAPKQQ
HHHHHHCCCCCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTDEAMPSDGMFADPPGVL
HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHH
QARAGVPPEAQRAPVDKAVAGVSLAGLVGEPRAPQTPAPAMRPAALPTGLPGMVATARRD
HHCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
PQNEGNGVEMIRAGKRAIE
CCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA