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The map label for this gene is cpaC [C]

Identifier: 94312586

GI number: 94312586

Start: 188142

End: 189563

Strand: Direct

Name: cpaC [C]

Synonym: Rmet_3654

Alternate gene names: 94312586

Gene position: 188142-189563 (Clockwise)

Preceding gene: 94312585

Following gene: 94312587

Centisome position: 7.29

GC content: 65.89

Gene sequence:

>1422_bases
ATGCCGAAAAAGTTGAATCACCGTGTTCTGGCGCGACTGGTCGCGCTGACGATGCTGGCGCTGGCCGCGGCGCCGATATC
GCAAACGGATGCACAAGCAGCGACACAAGCAGCGACACAAGCAATGTCGCCGCCGACAGGTTCCTTCGACACCGCAGGCT
CGCGCACGTTGCGCCTGCTAGCCGGTGCGCAACAGGAAATCCGGCCCGGACAGGCGCTGGAGCGCGTGGCGGTGGGTAAC
CCCGAGGTGGCCGATGCACTGCTGCTCAAGCATCGGGGTGGTCCATCCACTGTGCTCGTGGTGGCCCGCAAGCCCGGCGT
CACCGACCTCAAGATCTGGAGCCGCGATGTTGCGCCGGTCAGCTACACGGTGCGTGTGGATGCGGTGCGGCCCGATCCCG
GCGGCGCCAGCGTTGATCTCTCGTCCGCCGGGGCGTCGATCAGCGGCGAGTCTCCGGATGCCCCAGCCGCCGCGCGTACG
CTGATGGCGGCGCGCGCCGCCGTCTCCAGTGCCGATGGCAAGAGGGCAGGCGTTGTGGTTGACCGCTCGACGGTGCCGGT
CTCTGGCACTGTGCAGGTCGACGTCAAGGTGGTGGAGATCAGCAAGACCGTTCTCAAGGAAATCGGCCTGAACTTCTATC
GCGACAACGGCGGCTTCGCATTCGGTACCTTCAGCCCGTCGTCGCTGACCAAGGCCACGTTCACGCCGGGCGTTGGCACG
GTCGTGGACTCGGTGTCGCCAATCAGCAGCGCTTTCAACCTGATCGCCGGATCGGTGTCGAAGGGCATCTTCGCCAACCT
GAGCCTGATGGAAGCCAACGGTCTCGTCCGTGTGCTGGCCGAGCCGAGCCTGGTGGCGTTGTCGGGGCAGAGCGCGAGCT
TCCTGGCTGGCGGAGAAATTCCGATTCCGGTGCCGCAGGCGCTGGGGACCACGACGATCCAGTACAAGCCGTTCGGTATC
GGGCTCACGGTATCGCCGACGGTGATGTCGCGCGAGCGCATCGCGCTCAAGGTGGCGCCCGAGGCCAGCGATCTCGATCC
TTCGCGTGGCATCGTGCTGAACGGCGCCACGGTGCCGGCCATCGTCACGCGGCGCGCCGACACCACGATCGAACTCGGTG
ACGGCGAGAGCTTCGTGATCGGCGGCCTGGTGAGCCGCAACACGGTCAGCAATGTCAGCAAGGTCCCGTTCCTGGGCGAT
CTGCCGGTGATCGGCAGCTTCTTCAAGAACCTGAACTTCCATCAGGAAGACCGCGAACTGATGATCGTGGTCACGCCGCA
CCTGATCAAGCCCCTGGCCAAGGATTCGCCCGCAGCGGCCGGCGCGTCCCAGGACGGCCGCACCAGCGCCAATCCCAACG
TCTGGGGCCGCTACATGCTGGGCGAGTACGCGGACCAGAGCCTGCCAGGGTTCTCGAGATAG

Upstream 100 bases:

>100_bases
GGGATGGTCGCCACCGCACGGCGCGATCCCCAGAACGAAGGTAACGGCGTGGAAATGATCCGCGCCGGCAAGCGAGCGAT
TGAATAACGGACGACACGGT

Downstream 100 bases:

>100_bases
GCGGACCAACGATGGAGCGAAACACATCTGTGGATCATTTCCTGCTCAACACCACGCGCGAGGACGTCCGGCACTGGCTG
GGCCACGCGCTGGGCGCCGT

Product: pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MPKKLNHRVLARLVALTMLALAAAPISQTDAQAATQAATQAMSPPTGSFDTAGSRTLRLLAGAQQEIRPGQALERVAVGN
PEVADALLLKHRGGPSTVLVVARKPGVTDLKIWSRDVAPVSYTVRVDAVRPDPGGASVDLSSAGASISGESPDAPAAART
LMAARAAVSSADGKRAGVVVDRSTVPVSGTVQVDVKVVEISKTVLKEIGLNFYRDNGGFAFGTFSPSSLTKATFTPGVGT
VVDSVSPISSAFNLIAGSVSKGIFANLSLMEANGLVRVLAEPSLVALSGQSASFLAGGEIPIPVPQALGTTTIQYKPFGI
GLTVSPTVMSRERIALKVAPEASDLDPSRGIVLNGATVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVSKVPFLGD
LPVIGSFFKNLNFHQEDRELMIVVTPHLIKPLAKDSPAAAGASQDGRTSANPNVWGRYMLGEYADQSLPGFSR

Sequences:

>Translated_473_residues
MPKKLNHRVLARLVALTMLALAAAPISQTDAQAATQAATQAMSPPTGSFDTAGSRTLRLLAGAQQEIRPGQALERVAVGN
PEVADALLLKHRGGPSTVLVVARKPGVTDLKIWSRDVAPVSYTVRVDAVRPDPGGASVDLSSAGASISGESPDAPAAART
LMAARAAVSSADGKRAGVVVDRSTVPVSGTVQVDVKVVEISKTVLKEIGLNFYRDNGGFAFGTFSPSSLTKATFTPGVGT
VVDSVSPISSAFNLIAGSVSKGIFANLSLMEANGLVRVLAEPSLVALSGQSASFLAGGEIPIPVPQALGTTTIQYKPFGI
GLTVSPTVMSRERIALKVAPEASDLDPSRGIVLNGATVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVSKVPFLGD
LPVIGSFFKNLNFHQEDRELMIVVTPHLIKPLAKDSPAAAGASQDGRTSANPNVWGRYMLGEYADQSLPGFSR
>Mature_472_residues
PKKLNHRVLARLVALTMLALAAAPISQTDAQAATQAATQAMSPPTGSFDTAGSRTLRLLAGAQQEIRPGQALERVAVGNP
EVADALLLKHRGGPSTVLVVARKPGVTDLKIWSRDVAPVSYTVRVDAVRPDPGGASVDLSSAGASISGESPDAPAAARTL
MAARAAVSSADGKRAGVVVDRSTVPVSGTVQVDVKVVEISKTVLKEIGLNFYRDNGGFAFGTFSPSSLTKATFTPGVGTV
VDSVSPISSAFNLIAGSVSKGIFANLSLMEANGLVRVLAEPSLVALSGQSASFLAGGEIPIPVPQALGTTTIQYKPFGIG
LTVSPTVMSRERIALKVAPEASDLDPSRGIVLNGATVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVSKVPFLGDL
PVIGSFFKNLNFHQEDRELMIVVTPHLIKPLAKDSPAAAGASQDGRTSANPNVWGRYMLGEYADQSLPGFSR

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=251, Percent_Identity=30.6772908366534, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87082242, Length=187, Percent_Identity=29.9465240641711, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 48949; Mature: 48818

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKLNHRVLARLVALTMLALAAAPISQTDAQAATQAATQAMSPPTGSFDTAGSRTLRLL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
AGAQQEIRPGQALERVAVGNPEVADALLLKHRGGPSTVLVVARKPGVTDLKIWSRDVAPV
CCCHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCE
SYTVRVDAVRPDPGGASVDLSSAGASISGESPDAPAAARTLMAARAAVSSADGKRAGVVV
EEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
DRSTVPVSGTVQVDVKVVEISKTVLKEIGLNFYRDNGGFAFGTFSPSSLTKATFTPGVGT
ECCCCCCCCEEEEEEEEEEHHHHHHHHCCCEEEECCCCEEEECCCCCCCCEEEECCCCHH
VVDSVSPISSAFNLIAGSVSKGIFANLSLMEANGLVRVLAEPSLVALSGQSASFLAGGEI
HHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCEEEEECCCCEEEECCCC
PIPVPQALGTTTIQYKPFGIGLTVSPTVMSRERIALKVAPEASDLDPSRGIVLNGATVPA
CCCCCHHCCCCEEEEEEEEECEEECCHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCE
IVTRRADTTIELGDGESFVIGGLVSRNTVSNVSKVPFLGDLPVIGSFFKNLNFHQEDREL
EEEECCCCEEEECCCCEEEEECEECCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEE
MIVVTPHLIKPLAKDSPAAAGASQDGRTSANPNVWGRYMLGEYADQSLPGFSR
EEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PKKLNHRVLARLVALTMLALAAAPISQTDAQAATQAATQAMSPPTGSFDTAGSRTLRLL
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
AGAQQEIRPGQALERVAVGNPEVADALLLKHRGGPSTVLVVARKPGVTDLKIWSRDVAPV
CCCHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCE
SYTVRVDAVRPDPGGASVDLSSAGASISGESPDAPAAARTLMAARAAVSSADGKRAGVVV
EEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
DRSTVPVSGTVQVDVKVVEISKTVLKEIGLNFYRDNGGFAFGTFSPSSLTKATFTPGVGT
ECCCCCCCCEEEEEEEEEEHHHHHHHHCCCEEEECCCCEEEECCCCCCCCEEEECCCCHH
VVDSVSPISSAFNLIAGSVSKGIFANLSLMEANGLVRVLAEPSLVALSGQSASFLAGGEI
HHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCEEEEECCCCEEEECCCC
PIPVPQALGTTTIQYKPFGIGLTVSPTVMSRERIALKVAPEASDLDPSRGIVLNGATVPA
CCCCCHHCCCCEEEEEEEEECEEECCHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCE
IVTRRADTTIELGDGESFVIGGLVSRNTVSNVSKVPFLGDLPVIGSFFKNLNFHQEDREL
EEEECCCCEEEECCCCEEEEECEECCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEE
MIVVTPHLIKPLAKDSPAAAGASQDGRTSANPNVWGRYMLGEYADQSLPGFSR
EEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]