Click here to switch to the map view.

The map label for this gene is ocd2 [H]

Identifier: 94312566

GI number: 94312566

Start: 170105

End: 171082

Strand: Reverse

Name: ocd2 [H]

Synonym: Rmet_3634

Alternate gene names: 94312566

Gene position: 171082-170105 (Counterclockwise)

Preceding gene: 94312571

Following gene: 94312565

Centisome position: 6.63

GC content: 65.34

Gene sequence:

>978_bases
TTGAAGCATTGTGTAGACTGTATACCGAAATACAAACAAGACGCCCCTATGCTCCATATCACCGACACCCTGATCGATCG
CCACGTCACGGCCGCCGATGCGCAGGCCGCGATGCTCGACGCCTTCCGCAGCTTTGGCCGCGGGCAGGCCGCCATGCAGG
AACGCATCCGCACGGAGGCCGGCGGTGTGAAGCTTTCGACGCTGGGCGCGGTAATCCCGGATCAGCAGGTAGCCGGCGCC
AAGGTTTACACGACGATCGCCGGTCAGTTCTCCTTTGTCATCCTGCTGTTTTCGACGGTTGACGGACGCCCGCTGGCTTC
GTTCGACGCTGGCGCCATCACGCGGCTGCGCACTGCGGCCTGCACCGTGTTGGCCGCAAAGCGGTTGGCGCGCTCCGATG
CGCAAACCCTGGCGCTCTTCGGCGCAGGCACGCAGGGCGTGCAGCACGCATTGCAACTGTCGGCCGCGCTGCCGTTCCAG
CGCATCCTGATCTGTGATCCGTATGCCGATGCCGAGGCCGCCACGCGCCTGTCTGCCCAATGCGGCGTTTCCGTGTCATT
CGCGCAAGCCGAGGAAGCGGTCGCTGCGGCCGACATCATCGTCACAGCCTCACGCTCGACCACGCCACTGTTCCCTGGCG
CCATCGTCAAGCCGGGCACGTTTATCGCGGCGATCGGGTCGAGCCTGCCGCACACACGCGAGTTGGACGATGTAGCGCTG
TCGCGCGCCGCTGCAGTGGTCGTCGAATGGCGCCCGCAGTCGCTGCGGGAGGCCGGCGACCTGGTGCTCGCCGACAAGGC
AGTGCTACCGGACGAAAAGATCGTGGAACTGGCCGATGTACTGCTCGACACCGCGCCCACGCGCAAGCATGCCGACGACA
TCCTGATCTACAAGTCGGTCGGCGTGGGACTCGAGGATGTCGCGCTGGCCGGTATTGCCTATCAACGCATCACCGCCGCC
CAAGCCGCGGCTGCCTGA

Upstream 100 bases:

>100_bases
ATCCCCAAAAAAGGGGCGGATTTCCGCTCCAGCGCACGGAATGTGCGCATTTGGCACCAGGTCGGCGCGCGCGAATTTCG
TGAAAAGGGACTAGCGCTTT

Downstream 100 bases:

>100_bases
ACCCATTCCGATGAACCTGCCGCCGTGTGCGGCATTTTTGTCGGCCCAACAAAAGTGTAGGAAGTATACAAACCCGAAAA
CGCCGCGACACCGCTCAGCG

Product: ornithine cyclodeaminase/mu-crystallin

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKHCVDCIPKYKQDAPMLHITDTLIDRHVTAADAQAAMLDAFRSFGRGQAAMQERIRTEAGGVKLSTLGAVIPDQQVAGA
KVYTTIAGQFSFVILLFSTVDGRPLASFDAGAITRLRTAACTVLAAKRLARSDAQTLALFGAGTQGVQHALQLSAALPFQ
RILICDPYADAEAATRLSAQCGVSVSFAQAEEAVAAADIIVTASRSTTPLFPGAIVKPGTFIAAIGSSLPHTRELDDVAL
SRAAAVVVEWRPQSLREAGDLVLADKAVLPDEKIVELADVLLDTAPTRKHADDILIYKSVGVGLEDVALAGIAYQRITAA
QAAAA

Sequences:

>Translated_325_residues
MKHCVDCIPKYKQDAPMLHITDTLIDRHVTAADAQAAMLDAFRSFGRGQAAMQERIRTEAGGVKLSTLGAVIPDQQVAGA
KVYTTIAGQFSFVILLFSTVDGRPLASFDAGAITRLRTAACTVLAAKRLARSDAQTLALFGAGTQGVQHALQLSAALPFQ
RILICDPYADAEAATRLSAQCGVSVSFAQAEEAVAAADIIVTASRSTTPLFPGAIVKPGTFIAAIGSSLPHTRELDDVAL
SRAAAVVVEWRPQSLREAGDLVLADKAVLPDEKIVELADVLLDTAPTRKHADDILIYKSVGVGLEDVALAGIAYQRITAA
QAAAA
>Mature_325_residues
MKHCVDCIPKYKQDAPMLHITDTLIDRHVTAADAQAAMLDAFRSFGRGQAAMQERIRTEAGGVKLSTLGAVIPDQQVAGA
KVYTTIAGQFSFVILLFSTVDGRPLASFDAGAITRLRTAACTVLAAKRLARSDAQTLALFGAGTQGVQHALQLSAALPFQ
RILICDPYADAEAATRLSAQCGVSVSFAQAEEAVAAADIIVTASRSTTPLFPGAIVKPGTFIAAIGSSLPHTRELDDVAL
SRAAAVVVEWRPQSLREAGDLVLADKAVLPDEKIVELADVLLDTAPTRKHADDILIYKSVGVGLEDVALAGIAYQRITAA
QAAAA

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=238, Percent_Identity=30.672268907563, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI4503065, Length=238, Percent_Identity=30.672268907563, Blast_Score=112, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 34102; Mature: 34102

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHCVDCIPKYKQDAPMLHITDTLIDRHVTAADAQAAMLDAFRSFGRGQAAMQERIRTEA
CCCHHHHHHHHCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
GGVKLSTLGAVIPDQQVAGAKVYTTIAGQFSFVILLFSTVDGRPLASFDAGAITRLRTAA
CCEEEEHHCCCCCCCCCCCCEEEEEHHHHHHEEEHEEECCCCCCCCCCCCHHHHHHHHHH
CTVLAAKRLARSDAQTLALFGAGTQGVQHALQLSAALPFQRILICDPYADAEAATRLSAQ
HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
CGVSVSFAQAEEAVAAADIIVTASRSTTPLFPGAIVKPGTFIAAIGSSLPHTRELDDVAL
CCCEEEHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHH
SRAAAVVVEWRPQSLREAGDLVLADKAVLPDEKIVELADVLLDTAPTRKHADDILIYKSV
HHHEEEEEEECCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
GVGLEDVALAGIAYQRITAAQAAAA
CCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKHCVDCIPKYKQDAPMLHITDTLIDRHVTAADAQAAMLDAFRSFGRGQAAMQERIRTEA
CCCHHHHHHHHCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
GGVKLSTLGAVIPDQQVAGAKVYTTIAGQFSFVILLFSTVDGRPLASFDAGAITRLRTAA
CCEEEEHHCCCCCCCCCCCCEEEEEHHHHHHEEEHEEECCCCCCCCCCCCHHHHHHHHHH
CTVLAAKRLARSDAQTLALFGAGTQGVQHALQLSAALPFQRILICDPYADAEAATRLSAQ
HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
CGVSVSFAQAEEAVAAADIIVTASRSTTPLFPGAIVKPGTFIAAIGSSLPHTRELDDVAL
CCCEEEHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHH
SRAAAVVVEWRPQSLREAGDLVLADKAVLPDEKIVELADVLLDTAPTRKHADDILIYKSV
HHHEEEEEEECCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
GVGLEDVALAGIAYQRITAAQAAAA
CCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]