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The map label for this gene is yidC

Identifier: 94312544

GI number: 94312544

Start: 3924633

End: 3926300

Strand: Reverse

Name: yidC

Synonym: Rmet_3613

Alternate gene names: 94312544

Gene position: 3926300-3924633 (Counterclockwise)

Preceding gene: 94312545

Following gene: 94312543

Centisome position: 99.95

GC content: 64.15

Gene sequence:

>1668_bases
ATGGATATCAAACGCACCATCCTGTGGGTCATCTTCTCGATGTCCCTCGTGCTGCTCTACGACAACTGGCAGCGCGCCAA
CGGCCACGCGTCGATGTTCTTCCCGAGCGCCAACACGCAGCAGGCCGCCCCGGCCGGCGCTGGTGGCGCTACGCCTCAGG
CCGACGTGCCCAAGGCGAACGCGACGAACGCAGCCCCTGGAACGGTTCCGGCAGCGCCGCAAGCGGCTGCACAGCCGGTC
GGCGAGAAGGTCACCGTGACTACCGACGAGGTGCGCGCCGAGATCGACACGGCCGGCGGCATCCTGTCGCGCCTGGAACT
GCTCAACGAGCATGAGAAGGATGGCGCGCCGGTCGTCCTGCTTGAACGCGACGTCAATCGCACCTACCTGGCCCGCTCCG
GCCTGATCGGTGGCGACCTGCCGAACCACACCACCGTGTTCACGGTGGCGCCGGGCGCGCGCACGCTGGCACCGGGCCAG
GACAAGCTCGACGTAGTGCTGACCGCCGAGAAGAACGGCGTGAAGTTCGTCAAGACCTACACGTTCCACAAGGGCAGCTA
CGTGGTCGACACGCGCTTCGACGTGACCAACACGGGCACCGCGGCGGTTTCGCCGACGCTGTACCTGGAACTGGCGCGTG
ATGGCAGCAAGGTCGAGAAATCGCAGTTCTACAGCACGTTCACGGGCCCGGCGATCTACACGAACGCCGACAAGTACCAC
AAGCTCACCTTCGAAGACATCGCCAAGGGCAAGGCCACCGTGCCGGCCGCCACCGACAACGGCTGGGTGGCGATGGTGCA
GCACTACTTCGCATCGGCCTGGATTCCGCAGACCGGCAAGCAGCACAGCTTCTACGCCGAGCAGATCGACCCGAACCTGT
ACCGCGTGGGTATCCAGCAACCGCTGGGTCAACTGGCCCCGGGCGCAACGGTCAGCACCGATGCCCGCCTGTTCGCCGGC
CCGCAGGAAGAACGCATGCTCGAGCAGATCACCCCGGGCCTGGAACTGGTGAAGGACTACGGCTGGCTGACTATCCTGGC
CAAGCCGCTGTTCTGGCTGCTGGAAAAGCTGCACGGCTTCCTGGGTAACTGGGGCTGGTCGATCATCGGGCTGACCGTGC
TGATCAAGCTCGTGTTCTTCCCGCTGTCGGCTGCCAGCTACAAGTCGATGGGCAAGATGAAGGACCTGCAGCCCCGCATG
ACGGCCATCCGCGAGCGCCACAAGGGCGATCCGCAGAAGATGAACCAGGAAATGATGGCGCTGTACCGCACCGAGAAGGT
CAATCCGCTCGGCGGCTGCCTGCCCATCGTGATCCAGATTCCGGTGTTCATCGCGCTGTACTGGGTGCTGCTGTCGTCGG
TGGAAATGCGCGGCGCGCCGTGGCTGGGCTGGATTCACGATCTGTCGGTGCCGGATCCGTTCTACATCCTGCCGATCGTG
ATGGCCGTGTCGATGTTCGTGCAGACCCGACTGAACCCGACCCCGCCGGACCCCGTGCAGGCCAAGGTCATGATGATCAT
GCCGCTGGTGTTCTCGTTCATGTTCTTCTTCTTCCCGGCCGGCCTGGTGCTGTACTGGGTGGTGAACAACATCCTGTCGA
TCGCCCAGCAATGGCAGATCAACCGGATGCTCGGCAAGGGCAAGACGGCTGCGGTAGCCAAGAGCTGA

Upstream 100 bases:

>100_bases
CACGGGACCGCCGCGGCGCCCCCGGCATCCGCCGCGCCAGGCCGCCCGCCTGTCACGGTCCGGCTTCCCAGACCCTGATT
TCCTCCGACCATAGCGAGAC

Downstream 100 bases:

>100_bases
TCACCGCCGATCCGACCCCGAACCTGGAAAAACCCGGCCTCCTGCCGGGTTTTTTCTTTTTCGGCGCACGTCACTAGTCT
TATATCTTATATAAGACTAG

Product: membrane protein insertase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MDIKRTILWVIFSMSLVLLYDNWQRANGHASMFFPSANTQQAAPAGAGGATPQADVPKANATNAAPGTVPAAPQAAAQPV
GEKVTVTTDEVRAEIDTAGGILSRLELLNEHEKDGAPVVLLERDVNRTYLARSGLIGGDLPNHTTVFTVAPGARTLAPGQ
DKLDVVLTAEKNGVKFVKTYTFHKGSYVVDTRFDVTNTGTAAVSPTLYLELARDGSKVEKSQFYSTFTGPAIYTNADKYH
KLTFEDIAKGKATVPAATDNGWVAMVQHYFASAWIPQTGKQHSFYAEQIDPNLYRVGIQQPLGQLAPGATVSTDARLFAG
PQEERMLEQITPGLELVKDYGWLTILAKPLFWLLEKLHGFLGNWGWSIIGLTVLIKLVFFPLSAASYKSMGKMKDLQPRM
TAIRERHKGDPQKMNQEMMALYRTEKVNPLGGCLPIVIQIPVFIALYWVLLSSVEMRGAPWLGWIHDLSVPDPFYILPIV
MAVSMFVQTRLNPTPPDPVQAKVMMIMPLVFSFMFFFFPAGLVLYWVVNNILSIAQQWQINRMLGKGKTAAVAKS

Sequences:

>Translated_555_residues
MDIKRTILWVIFSMSLVLLYDNWQRANGHASMFFPSANTQQAAPAGAGGATPQADVPKANATNAAPGTVPAAPQAAAQPV
GEKVTVTTDEVRAEIDTAGGILSRLELLNEHEKDGAPVVLLERDVNRTYLARSGLIGGDLPNHTTVFTVAPGARTLAPGQ
DKLDVVLTAEKNGVKFVKTYTFHKGSYVVDTRFDVTNTGTAAVSPTLYLELARDGSKVEKSQFYSTFTGPAIYTNADKYH
KLTFEDIAKGKATVPAATDNGWVAMVQHYFASAWIPQTGKQHSFYAEQIDPNLYRVGIQQPLGQLAPGATVSTDARLFAG
PQEERMLEQITPGLELVKDYGWLTILAKPLFWLLEKLHGFLGNWGWSIIGLTVLIKLVFFPLSAASYKSMGKMKDLQPRM
TAIRERHKGDPQKMNQEMMALYRTEKVNPLGGCLPIVIQIPVFIALYWVLLSSVEMRGAPWLGWIHDLSVPDPFYILPIV
MAVSMFVQTRLNPTPPDPVQAKVMMIMPLVFSFMFFFFPAGLVLYWVVNNILSIAQQWQINRMLGKGKTAAVAKS
>Mature_555_residues
MDIKRTILWVIFSMSLVLLYDNWQRANGHASMFFPSANTQQAAPAGAGGATPQADVPKANATNAAPGTVPAAPQAAAQPV
GEKVTVTTDEVRAEIDTAGGILSRLELLNEHEKDGAPVVLLERDVNRTYLARSGLIGGDLPNHTTVFTVAPGARTLAPGQ
DKLDVVLTAEKNGVKFVKTYTFHKGSYVVDTRFDVTNTGTAAVSPTLYLELARDGSKVEKSQFYSTFTGPAIYTNADKYH
KLTFEDIAKGKATVPAATDNGWVAMVQHYFASAWIPQTGKQHSFYAEQIDPNLYRVGIQQPLGQLAPGATVSTDARLFAG
PQEERMLEQITPGLELVKDYGWLTILAKPLFWLLEKLHGFLGNWGWSIIGLTVLIKLVFFPLSAASYKSMGKMKDLQPRM
TAIRERHKGDPQKMNQEMMALYRTEKVNPLGGCLPIVIQIPVFIALYWVLLSSVEMRGAPWLGWIHDLSVPDPFYILPIV
MAVSMFVQTRLNPTPPDPVQAKVMMIMPLVFSFMFFFFPAGLVLYWVVNNILSIAQQWQINRMLGKGKTAAVAKS

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790140, Length=500, Percent_Identity=39.8, Blast_Score=362, Evalue=1e-101,
Organism=Drosophila melanogaster, GI24662345, Length=194, Percent_Identity=28.8659793814433, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21356443, Length=194, Percent_Identity=28.8659793814433, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OXAA_RALME (Q1LH91)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_585754.1
- ProteinModelPortal:   Q1LH91
- SMR:   Q1LH91
- STRING:   Q1LH91
- GeneID:   4040462
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_3613
- eggNOG:   COG0706
- HOGENOM:   HBG507812
- OMA:   TYRGAAF
- PhylomeDB:   Q1LH91
- ProtClustDB:   PRK01318
- BioCyc:   RMET266264:RMET_3613-MONOMER
- HAMAP:   MF_01810
- InterPro:   IPR019998
- InterPro:   IPR001708
- PANTHER:   PTHR12428
- PRINTS:   PR00701
- PRINTS:   PR01900
- TIGRFAMs:   TIGR03593
- TIGRFAMs:   TIGR03592

Pfam domain/function: PF02096 60KD_IMP

EC number: NA

Molecular weight: Translated: 61104; Mature: 61104

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x40cce0d4)-; HASH(0x19cdb920)-; HASH(0x19d3f9ec)-; HASH(0x1a29c958)-; HASH(0x19819e64)-; HASH(0x19f65194)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKRTILWVIFSMSLVLLYDNWQRANGHASMFFPSANTQQAAPAGAGGATPQADVPKAN
CCHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
ATNAAPGTVPAAPQAAAQPVGEKVTVTTDEVRAEIDTAGGILSRLELLNEHEKDGAPVVL
CCCCCCCCCCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
LERDVNRTYLARSGLIGGDLPNHTTVFTVAPGARTLAPGQDKLDVVLTAEKNGVKFVKTY
EECCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEE
TFHKGSYVVDTRFDVTNTGTAAVSPTLYLELARDGSKVEKSQFYSTFTGPAIYTNADKYH
EEECCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCHHE
KLTFEDIAKGKATVPAATDNGWVAMVQHYFASAWIPQTGKQHSFYAEQIDPNLYRVGIQQ
ECCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEHHHCCCCCEEECHHH
PLGQLAPGATVSTDARLFAGPQEERMLEQITPGLELVKDYGWLTILAKPLFWLLEKLHGF
HHHHHCCCCEECCCCCEECCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LGNWGWSIIGLTVLIKLVFFPLSAASYKSMGKMKDLQPRMTAIRERHKGDPQKMNQEMMA
HCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
LYRTEKVNPLGGCLPIVIQIPVFIALYWVLLSSVEMRGAPWLGWIHDLSVPDPFYILPIV
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHH
MAVSMFVQTRLNPTPPDPVQAKVMMIMPLVFSFMFFFFPAGLVLYWVVNNILSIAQQWQI
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRMLGKGKTAAVAKS
HHHHCCCCCCCCCCH
>Mature Secondary Structure
MDIKRTILWVIFSMSLVLLYDNWQRANGHASMFFPSANTQQAAPAGAGGATPQADVPKAN
CCHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
ATNAAPGTVPAAPQAAAQPVGEKVTVTTDEVRAEIDTAGGILSRLELLNEHEKDGAPVVL
CCCCCCCCCCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
LERDVNRTYLARSGLIGGDLPNHTTVFTVAPGARTLAPGQDKLDVVLTAEKNGVKFVKTY
EECCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEE
TFHKGSYVVDTRFDVTNTGTAAVSPTLYLELARDGSKVEKSQFYSTFTGPAIYTNADKYH
EEECCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCHHE
KLTFEDIAKGKATVPAATDNGWVAMVQHYFASAWIPQTGKQHSFYAEQIDPNLYRVGIQQ
ECCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEHHHCCCCCEEECHHH
PLGQLAPGATVSTDARLFAGPQEERMLEQITPGLELVKDYGWLTILAKPLFWLLEKLHGF
HHHHHCCCCEECCCCCEECCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LGNWGWSIIGLTVLIKLVFFPLSAASYKSMGKMKDLQPRMTAIRERHKGDPQKMNQEMMA
HCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
LYRTEKVNPLGGCLPIVIQIPVFIALYWVLLSSVEMRGAPWLGWIHDLSVPDPFYILPIV
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHH
MAVSMFVQTRLNPTPPDPVQAKVMMIMPLVFSFMFFFFPAGLVLYWVVNNILSIAQQWQI
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRMLGKGKTAAVAKS
HHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA