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The map label for this gene is abgR [H]

Identifier: 94312486

GI number: 94312486

Start: 3854902

End: 3855810

Strand: Reverse

Name: abgR [H]

Synonym: Rmet_3555

Alternate gene names: 94312486

Gene position: 3855810-3854902 (Counterclockwise)

Preceding gene: 94312490

Following gene: 94312479

Centisome position: 98.16

GC content: 65.57

Gene sequence:

>909_bases
ATGCGAGACCATCAACTGAAGGCGTGGCTGCGGCTGGTCGAAACCGGCAGCATTCGCGGCGCCGCGCGCAGTCTGCACCT
GAGCCAGGCAGCGATTACGAAGGCCATTCGGGAACTGGAAGAAGACCTCGATGCGCCGCTGATCGTCAGAAGCTCGCGCG
GTATCACGCTCACCGAGTGCGGTCGCCAGCTGACCGTCCGCGCGCGGCAGTCGCAGAACCAGCTTACGCTCGCGCGCCAG
GACATCCGTCAGTTGATGGGCGGCGAAAAAGCCCGCGTGTCGGTCGCGGTGACGCCGATGGTGTTCCTGAGCGTGCTCCC
CGATGTCCTGCGAGATTTCAGGCGCAGCATGCCGCTGGCCGACCTGACGCTCGAAGAGGGCCTGATGCCCGCGGTATTGC
CCGCGCTGCGCGCCGGCACGGTCGACTTCGCGATTGCCGCGCTGATTCCGGAAACGCTGGGCAGCGAGTTCGATTTCGAG
CCGTTGAAGACGCTCGACGTCATGATCGCGGGCCGCCGTGGACACCCGCTGGCCAACGCCACGCGCTGGGAAGAACTGGT
GGAGTGCGACTGGCTGATGCAGCTATCGCCAGGCAGCCAGCACACCTTCCTGCTCGATCAGTTGCAGCAACTCGGCCTGC
CACTTCCCCGGCGCATCATCAAGACCAATACGTTCGGCGTGACGTCGAGTCTGCTGGTCAGCACCGATGCGGTGTCGACG
ATCCCGAGCAGCATCCTGAAGGTGGGTCCCCAGTCCGAGCAGCTCACGCGCATCCCCGTGGACGTACCGCTGCGGCCCCT
GACGCTCGGCATTGTGACGCTGCGCGACAACCCGCTCTCGCTGGCCGCCACGCGATTCTCGAACCTGTTTCGCGAGGCAC
TGTCGCGCGTGAATCCGGCGCTGGACTAG

Upstream 100 bases:

>100_bases
TATGATGCATACCAAAAGACAATACTTTTCCGATGGTGACCACTAAAAGTTGTCATCGTTTGCGGTGCGGCAGGTCACCT
GCCCTGGGGAGACAACACAC

Downstream 100 bases:

>100_bases
TTCGCATCCCTAGCCGAACAGTTCCTCCGCCACCGTGGGATGCAGTGGCATCGTCGTCTTCAGATGCGCATCCTTCACGC
CGAGGCGCAGTGCGACGGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRDHQLKAWLRLVETGSIRGAARSLHLSQAAITKAIRELEEDLDAPLIVRSSRGITLTECGRQLTVRARQSQNQLTLARQ
DIRQLMGGEKARVSVAVTPMVFLSVLPDVLRDFRRSMPLADLTLEEGLMPAVLPALRAGTVDFAIAALIPETLGSEFDFE
PLKTLDVMIAGRRGHPLANATRWEELVECDWLMQLSPGSQHTFLLDQLQQLGLPLPRRIIKTNTFGVTSSLLVSTDAVST
IPSSILKVGPQSEQLTRIPVDVPLRPLTLGIVTLRDNPLSLAATRFSNLFREALSRVNPALD

Sequences:

>Translated_302_residues
MRDHQLKAWLRLVETGSIRGAARSLHLSQAAITKAIRELEEDLDAPLIVRSSRGITLTECGRQLTVRARQSQNQLTLARQ
DIRQLMGGEKARVSVAVTPMVFLSVLPDVLRDFRRSMPLADLTLEEGLMPAVLPALRAGTVDFAIAALIPETLGSEFDFE
PLKTLDVMIAGRRGHPLANATRWEELVECDWLMQLSPGSQHTFLLDQLQQLGLPLPRRIIKTNTFGVTSSLLVSTDAVST
IPSSILKVGPQSEQLTRIPVDVPLRPLTLGIVTLRDNPLSLAATRFSNLFREALSRVNPALD
>Mature_302_residues
MRDHQLKAWLRLVETGSIRGAARSLHLSQAAITKAIRELEEDLDAPLIVRSSRGITLTECGRQLTVRARQSQNQLTLARQ
DIRQLMGGEKARVSVAVTPMVFLSVLPDVLRDFRRSMPLADLTLEEGLMPAVLPALRAGTVDFAIAALIPETLGSEFDFE
PLKTLDVMIAGRRGHPLANATRWEELVECDWLMQLSPGSQHTFLLDQLQQLGLPLPRRIIKTNTFGVTSSLLVSTDAVST
IPSSILKVGPQSEQLTRIPVDVPLRPLTLGIVTLRDNPLSLAATRFSNLFREALSRVNPALD

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=278, Percent_Identity=30.5755395683453, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1789506, Length=295, Percent_Identity=24.7457627118644, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI145693105, Length=283, Percent_Identity=27.5618374558304, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI87081904, Length=300, Percent_Identity=26.3333333333333, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790208, Length=169, Percent_Identity=33.7278106508876, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787949, Length=164, Percent_Identity=28.0487804878049, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=27.3356401384083, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786508, Length=179, Percent_Identity=27.3743016759777, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1786713, Length=175, Percent_Identity=25.1428571428571, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790399, Length=308, Percent_Identity=24.025974025974, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33301; Mature: 33301

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDHQLKAWLRLVETGSIRGAARSLHLSQAAITKAIRELEEDLDAPLIVRSSRGITLTEC
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEHHHC
GRQLTVRARQSQNQLTLARQDIRQLMGGEKARVSVAVTPMVFLSVLPDVLRDFRRSMPLA
CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCH
DLTLEEGLMPAVLPALRAGTVDFAIAALIPETLGSEFDFEPLKTLDVMIAGRRGHPLANA
HHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEECCCCCCCCCH
TRWEELVECDWLMQLSPGSQHTFLLDQLQQLGLPLPRRIIKTNTFGVTSSLLVSTDAVST
HHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHH
IPSSILKVGPQSEQLTRIPVDVPLRPLTLGIVTLRDNPLSLAATRFSNLFREALSRVNPA
HHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
LD
CC
>Mature Secondary Structure
MRDHQLKAWLRLVETGSIRGAARSLHLSQAAITKAIRELEEDLDAPLIVRSSRGITLTEC
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEHHHC
GRQLTVRARQSQNQLTLARQDIRQLMGGEKARVSVAVTPMVFLSVLPDVLRDFRRSMPLA
CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCH
DLTLEEGLMPAVLPALRAGTVDFAIAALIPETLGSEFDFEPLKTLDVMIAGRRGHPLANA
HHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHEEECCCCCCCCCH
TRWEELVECDWLMQLSPGSQHTFLLDQLQQLGLPLPRRIIKTNTFGVTSSLLVSTDAVST
HHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHH
IPSSILKVGPQSEQLTRIPVDVPLRPLTLGIVTLRDNPLSLAATRFSNLFREALSRVNPA
HHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
LD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]