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The map label for this gene is atoC [C]

Identifier: 94312490

GI number: 94312490

Start: 3859294

End: 3860010

Strand: Reverse

Name: atoC [C]

Synonym: Rmet_3559

Alternate gene names: 94312490

Gene position: 3860010-3859294 (Counterclockwise)

Preceding gene: 94312491

Following gene: 94312486

Centisome position: 98.27

GC content: 64.85

Gene sequence:

>717_bases
ATGGCAACCATCCTCGTAGTCGATGACGAAATGGGTATCCGGGAGCTGCTCTCGGAAATCCTGAGCGACGAAGGCCACGT
GGTCGAAGTGGCGGAGAACGCCCAGCAGGCACGCGAGTTTCGTGCAGGCGCGACGCCGGACCTGGTGCTGCTCGATATCT
GGATGCCAGATACGGACGGCGTGACGCTGCTCAAGGAGTGGTCGGCACAGGGCTTCCTGACCATGCCGGTCATCATGATG
TCCGGCCATGCGACGATCGACACGGCCGTCGAAGCCACCAAGATCGGCGCGCTCAACTTCCTTGAGAAGCCGATCGCGCT
GCAGAAGCTGCTGTCCGCCGTCGAGGCAGGGCTGGCCCGTGGCGTCGAGCGCCCACGTGCCGCGCCTTCCGTGGTGGCCG
CACCTGCCGCCGTCAGCACGGGCGAAGCCGCGGTCTCCGCGATAGCAACCGCCGAAGTACCGGCCGAGGCCATCGCGAAC
GGCACGGCCACACGCGGTGTACCCGAAGGTGAAATGCAGTTCTCGTTCGACATGCCGCTGCGTGAAGCCCGCGACCTGTT
CGAGCGTGCGTACTTCGAGTACCACCTGGTGCGCGAACACGGCAGCATGACCCGTGTGGCGGAGAAGACCGGTCTGGAGC
GTACCCACCTGTACCGCAAGCTCAAGCAGCTGGGCGTGGAACTGGGCCGCAACAAGCCCGAGCCGACCGAACAATAA

Upstream 100 bases:

>100_bases
TCATTGGCGCTCAGATCTCGATCCTGTTCGTTAAGCTGGCATAGTCAATCTTGCGCACCGGCAACGTCCGGTGACGCTGC
GGTGGGGTTAAGAGGAACGT

Downstream 100 bases:

>100_bases
GTGGCTCGACAAAACGCTTGACGAACCAATTTTGCACAGTTATAGTTTCGCTTCTTTGGCCCGGTAGCTCAGTCGGTAGA
GCAGAGGATTGAAAATCCTT

Product: two-component system response regulator(CheY-like receiver)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MATILVVDDEMGIRELLSEILSDEGHVVEVAENAQQAREFRAGATPDLVLLDIWMPDTDGVTLLKEWSAQGFLTMPVIMM
SGHATIDTAVEATKIGALNFLEKPIALQKLLSAVEAGLARGVERPRAAPSVVAAPAAVSTGEAAVSAIATAEVPAEAIAN
GTATRGVPEGEMQFSFDMPLREARDLFERAYFEYHLVREHGSMTRVAEKTGLERTHLYRKLKQLGVELGRNKPEPTEQ

Sequences:

>Translated_238_residues
MATILVVDDEMGIRELLSEILSDEGHVVEVAENAQQAREFRAGATPDLVLLDIWMPDTDGVTLLKEWSAQGFLTMPVIMM
SGHATIDTAVEATKIGALNFLEKPIALQKLLSAVEAGLARGVERPRAAPSVVAAPAAVSTGEAAVSAIATAEVPAEAIAN
GTATRGVPEGEMQFSFDMPLREARDLFERAYFEYHLVREHGSMTRVAEKTGLERTHLYRKLKQLGVELGRNKPEPTEQ
>Mature_237_residues
ATILVVDDEMGIRELLSEILSDEGHVVEVAENAQQAREFRAGATPDLVLLDIWMPDTDGVTLLKEWSAQGFLTMPVIMMS
GHATIDTAVEATKIGALNFLEKPIALQKLLSAVEAGLARGVERPRAAPSVVAAPAAVSTGEAAVSAIATAEVPAEAIANG
TATRGVPEGEMQFSFDMPLREARDLFERAYFEYHLVREHGSMTRVAEKTGLERTHLYRKLKQLGVELGRNKPEPTEQ

Specific function: Member of the two-component regulatory system RBE_0312/RBE_0470 [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=115, Percent_Identity=40, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1790299, Length=140, Percent_Identity=34.2857142857143, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790437, Length=131, Percent_Identity=36.6412213740458, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787375, Length=118, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789809, Length=127, Percent_Identity=31.496062992126, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786911, Length=123, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786784, Length=118, Percent_Identity=31.3559322033898, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 25806; Mature: 25675

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATILVVDDEMGIRELLSEILSDEGHVVEVAENAQQAREFRAGATPDLVLLDIWMPDTDG
CEEEEEEECCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
VTLLKEWSAQGFLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLSAVEAGLAR
HHHHHHHCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVERPRAAPSVVAAPAAVSTGEAAVSAIATAEVPAEAIANGTATRGVPEGEMQFSFDMPL
CCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEEECCCH
REARDLFERAYFEYHLVREHGSMTRVAEKTGLERTHLYRKLKQLGVELGRNKPEPTEQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ATILVVDDEMGIRELLSEILSDEGHVVEVAENAQQAREFRAGATPDLVLLDIWMPDTDG
EEEEEEECCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
VTLLKEWSAQGFLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLSAVEAGLAR
HHHHHHHCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVERPRAAPSVVAAPAAVSTGEAAVSAIATAEVPAEAIANGTATRGVPEGEMQFSFDMPL
CCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEEECCCH
REARDLFERAYFEYHLVREHGSMTRVAEKTGLERTHLYRKLKQLGVELGRNKPEPTEQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA