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The map label for this gene is rlpA [C]

Identifier: 94312363

GI number: 94312363

Start: 3709749

End: 3710504

Strand: Reverse

Name: rlpA [C]

Synonym: Rmet_3432

Alternate gene names: 94312363

Gene position: 3710504-3709749 (Counterclockwise)

Preceding gene: 94312367

Following gene: 94312361

Centisome position: 94.46

GC content: 67.33

Gene sequence:

>756_bases
ATGTTTAGCCAGCCCGCACTCCGCCCGGAGTCCGTGCGCACGATAGCGCCCGGCTCCACACGCTTCCTTCGTCAATGCGC
GATCATCGTATCGGCGTTGGTGATGGCCGCGTGCGCGACGCCGCCGGGCGGCGACACCGAGAACGCATCGACGCAAGGCG
CGATCCCGACCAAGTCCGCACGGTCGAAGTCCGGCACGAACGCGCCGGCGACGGCCAAGTCCGACGATCGCGGTAGCTGG
AACCTGTTCGGCCTCGATGAAGGCGCGCCGGCGCAATCGTCGATCGACGGCCTGCGCGCGGACATGGGTACGTTCGAGCA
GCGTGGCACGGCATCCTGGTACGGCAAGGGCTTTCACGGCCGCAAGACCGCCAATGGCGAACGCTTCGACATGCGCGCCA
TGACGGCGGCTCACCCGACCCTGCCGCTAGACAGCTGGGTGCTGGTGCGCAATCTCAGCAACAACAAGGTGGCCGTGGTG
CGGATCAACGACCGTGGCCCCTATCATGGCAACCGGATCCTCGACCTGTCGTACGCGGCAGCCAAGCGCCTGAGCTTCGT
CAATAGTGGCTCGACCAAGGTGGAAATCCGCCGGCTGTCCCGCACCGAAGTGGCGGCCCTGGGCCCCGAGATCGAGGCGG
GTGGCACCGAGGCCGGCGATGGCAGCGGCGCCGACGAGATGCCGGATACCGCCAATGCGCTGGTGCCGACGAAGTCGAAG
GCCAGGAAGTCCACGGTCAAGCGCAAGCGCCCCTGA

Upstream 100 bases:

>100_bases
GGATTGCGGGGAATTGACACCAGTTTAAGCACCTTTTGCTTAAGTTTCGTAACAAAATCAAGGCACTAGCTTCAATACGA
CTCTGTTAGACTGCGCGCCT

Downstream 100 bases:

>100_bases
TCCGCGATGCAGGCCGGCCGGATCGATCCTCTCGCTCCCCGCTCAACCGCCCGCCTGCAGCCCCCCTCCCAATTCAGATT
TTTCTCACTCAGCACGCTGC

Product: rare lipoprotein A family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MFSQPALRPESVRTIAPGSTRFLRQCAIIVSALVMAACATPPGGDTENASTQGAIPTKSARSKSGTNAPATAKSDDRGSW
NLFGLDEGAPAQSSIDGLRADMGTFEQRGTASWYGKGFHGRKTANGERFDMRAMTAAHPTLPLDSWVLVRNLSNNKVAVV
RINDRGPYHGNRILDLSYAAAKRLSFVNSGSTKVEIRRLSRTEVAALGPEIEAGGTEAGDGSGADEMPDTANALVPTKSK
ARKSTVKRKRP

Sequences:

>Translated_251_residues
MFSQPALRPESVRTIAPGSTRFLRQCAIIVSALVMAACATPPGGDTENASTQGAIPTKSARSKSGTNAPATAKSDDRGSW
NLFGLDEGAPAQSSIDGLRADMGTFEQRGTASWYGKGFHGRKTANGERFDMRAMTAAHPTLPLDSWVLVRNLSNNKVAVV
RINDRGPYHGNRILDLSYAAAKRLSFVNSGSTKVEIRRLSRTEVAALGPEIEAGGTEAGDGSGADEMPDTANALVPTKSK
ARKSTVKRKRP
>Mature_251_residues
MFSQPALRPESVRTIAPGSTRFLRQCAIIVSALVMAACATPPGGDTENASTQGAIPTKSARSKSGTNAPATAKSDDRGSW
NLFGLDEGAPAQSSIDGLRADMGTFEQRGTASWYGKGFHGRKTANGERFDMRAMTAAHPTLPLDSWVLVRNLSNNKVAVV
RINDRGPYHGNRILDLSYAAAKRLSFVNSGSTKVEIRRLSRTEVAALGPEIEAGGTEAGDGSGADEMPDTANALVPTKSK
ARKSTVKRKRP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=96, Percent_Identity=48.9583333333333, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 26629; Mature: 26629

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSQPALRPESVRTIAPGSTRFLRQCAIIVSALVMAACATPPGGDTENASTQGAIPTKSA
CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
RSKSGTNAPATAKSDDRGSWNLFGLDEGAPAQSSIDGLRADMGTFEQRGTASWYGKGFHG
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RKTANGERFDMRAMTAAHPTLPLDSWVLVRNLSNNKVAVVRINDRGPYHGNRILDLSYAA
CCCCCCCEEEHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEHHHH
AKRLSFVNSGSTKVEIRRLSRTEVAALGPEIEAGGTEAGDGSGADEMPDTANALVPTKSK
HHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ARKSTVKRKRP
HHHHHHHCCCC
>Mature Secondary Structure
MFSQPALRPESVRTIAPGSTRFLRQCAIIVSALVMAACATPPGGDTENASTQGAIPTKSA
CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
RSKSGTNAPATAKSDDRGSWNLFGLDEGAPAQSSIDGLRADMGTFEQRGTASWYGKGFHG
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RKTANGERFDMRAMTAAHPTLPLDSWVLVRNLSNNKVAVVRINDRGPYHGNRILDLSYAA
CCCCCCCEEEHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEHHHH
AKRLSFVNSGSTKVEIRRLSRTEVAALGPEIEAGGTEAGDGSGADEMPDTANALVPTKSK
HHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ARKSTVKRKRP
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]