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The map label for this gene is yraN [C]

Identifier: 94312361

GI number: 94312361

Start: 3708308

End: 3708712

Strand: Reverse

Name: yraN [C]

Synonym: Rmet_3430

Alternate gene names: 94312361

Gene position: 3708712-3708308 (Counterclockwise)

Preceding gene: 94312363

Following gene: 94312360

Centisome position: 94.42

GC content: 69.88

Gene sequence:

>405_bases
TTGCCGGCGCGGCCGGCATCGTCCACGACGCGGCAAGGCGCGCTGGCCGAGGATCGCGCGCTTGCCTACCTGCAGCGGCA
GGGTCTGGTGGCGGTCGAACGCAATTATCGCTGCAAAGGCGGCGAGATTGACCTGATCATGCGCGCTGCTGACGATACGC
TGGTTTTCGTCGAGGTGCGCAAGCGCGGCGGACGCGGGTTTGGCGGCGCGGCGGCAAGCATTACGCTGACCAAGCAGCGG
CGCGTGCTGCGCGCGGCCAGTCATTACCTTGCCACGCTGGACCGGCTGCCGCCATGCCGGGTGGACGTGGTGGCGCTGGA
CCCGGGCCGGCTCGAATGGCTGCGGAACGCGTTCGACCTCGGGGCGCTGGATTCCGAGGGCGGCGGCGAGGGGCCTGCGT
CATAA

Upstream 100 bases:

>100_bases
GCCCGGTGGGTAGGTCTGACCGCTTGCCAGCAGGGTCCAGTCACTCATGCTTGGAGAACTTCCGTTGATTCGCTCATTCA
AAACCACCACGCCATCCGCG

Downstream 100 bases:

>100_bases
TGCGCGGGATTGTGCAGAAGTCATCAAGCCATGAGTATTGAAAGTATCGAGCAGCAATTCCTGGACAGTGCCGAGACCAA
GCGGATGGCCGCCACGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MPARPASSTTRQGALAEDRALAYLQRQGLVAVERNYRCKGGEIDLIMRAADDTLVFVEVRKRGGRGFGGAAASITLTKQR
RVLRAASHYLATLDRLPPCRVDVVALDPGRLEWLRNAFDLGALDSEGGGEGPAS

Sequences:

>Translated_134_residues
MPARPASSTTRQGALAEDRALAYLQRQGLVAVERNYRCKGGEIDLIMRAADDTLVFVEVRKRGGRGFGGAAASITLTKQR
RVLRAASHYLATLDRLPPCRVDVVALDPGRLEWLRNAFDLGALDSEGGGEGPAS
>Mature_133_residues
PARPASSTTRQGALAEDRALAYLQRQGLVAVERNYRCKGGEIDLIMRAADDTLVFVEVRKRGGRGFGGAAASITLTKQRR
VLRAASHYLATLDRLPPCRVDVVALDPGRLEWLRNAFDLGALDSEGGGEGPAS

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=127, Percent_Identity=41.7322834645669, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3430_RALME (Q1LHS4)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_585571.1
- ProteinModelPortal:   Q1LHS4
- STRING:   Q1LHS4
- GeneID:   4040275
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_3430
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   QWLKNAF
- PhylomeDB:   Q1LHS4
- ProtClustDB:   PRK14673
- BioCyc:   RMET266264:RMET_3430-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 14422; Mature: 14290

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARPASSTTRQGALAEDRALAYLQRQGLVAVERNYRCKGGEIDLIMRAADDTLVFVEVR
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEECCCEEEEEEEE
KRGGRGFGGAAASITLTKQRRVLRAASHYLATLDRLPPCRVDVVALDPGRLEWLRNAFDL
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCC
GALDSEGGGEGPAS
CCCCCCCCCCCCCC
>Mature Secondary Structure 
PARPASSTTRQGALAEDRALAYLQRQGLVAVERNYRCKGGEIDLIMRAADDTLVFVEVR
CCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEECCCEEEEEEEE
KRGGRGFGGAAASITLTKQRRVLRAASHYLATLDRLPPCRVDVVALDPGRLEWLRNAFDL
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCC
GALDSEGGGEGPAS
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA