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The map label for this gene is nirS [H]

Identifier: 94312103

GI number: 94312103

Start: 3444791

End: 3446440

Strand: Reverse

Name: nirS [H]

Synonym: Rmet_3172

Alternate gene names: 94312103

Gene position: 3446440-3444791 (Counterclockwise)

Preceding gene: 94312104

Following gene: 94312102

Centisome position: 87.74

GC content: 60.48

Gene sequence:

>1650_bases
ATGAAAGCGAAATCATGGATGTTCCCCGCACTGGCGGCCATGCCGCTCTTCTTCTGGAGTGCGCACGGTAGCGCCCAGAC
GGCGCCGACTCAGAATCCCGAGCCGAAGCTGACTGCGGAAGAATTCAACCACGCCAGGCAGATCTATTTCGAACGGTGCG
CAGGCTGCCATGGCGTGCTGCGCAAGGGCGCCACGGGCAAACCGCTGACACCCGACATCACGCGTGCCCGTGGCACCGAA
TACTTGAAGACGTTCATCAAGTACGGCAGTCCGGCCGGTATGCCCAACTGGGGCACCTCGGGCGATCTCACCGATCCCGA
GGTCGATCTGATGGCGCGCTACATCCAGCTCGATCCTCCGACACCGCCGGAATTCTCGCTGGCCGACATCGAAAAATCGC
GCAAGGACATCGTGCCCGTGGCCAAGCGGCCAACGCGCAAGATGAACAACTACAACCTGCAGAACCTGTTCTCGGTCACG
CTGCGCGATTCCGGTGAGGTGGCCCTGATCGACGGCGACAGCAAGCAGATCATCAATATCGTCAAGACCGGCTACGCGGT
GCACATCTCGCGCATGTCGGCGTCCGGGCGCTACCTGTACGTGATCGGCCGCGATGCGCGTCTGAACCTGATCGACCTGT
GGCTGCCCAAGCCGGACAACGTCGCGGAAGTAAAGATCGGTCTCGAGGCGCGTTCGGTGGAAACCTCGAAGTACAAGGGC
TACGAAGACAAGTACGCCGTGGCCGGCTCGTACTGGCCGCCGCAGTACGTGATCATGGAAGGTGACACACTCAAGCCGCT
GAAGGTAGTGTCCACACGCGGCATGACCGTCGACAACGAGTACCACCCCGAGCCGCGTGTCGCATCGATCGTTGCCAGCC
ATTTCCGTCCCGAGTTCGTCATCAACGCGAAGGAAACAGGCAAGATCCTGATGGTCGATTATTCGGATCTGAAGAACCTG
AAGACCACCACGATCGATTCCGCCAAGTTCCTTCATGACGGTGGTTTCGACTCCACGGGTCGCTACTTCCTGGTGGCCGC
GAACGCATCGAACAAGATCGCTGTCGTGGATACCAAGGAAGACAAGCTGGCCGCGCTGGTCGATGTCGGCAAGACCCCGC
ACCCGGGACGTGGCGCGAACTTCGTGCATCCGAAGTTCGGTCCGGTCTGGGCCACGAGCCATCTCGGCGACGAAACCATC
AGCCTGATCGGCACCGATCCCATCAACCACAAGGCGCAGGCCTGGAAGGTGGTCGAAACGCTCAAGGGACAGGGCGGTGG
CTCGCTGTTCATCAAGACCAATCCGAAGTCGCACAACCTGTGGGTGGATACGCCGCTCAATCCCGACGCGAAGCTGAACC
AGAGCGTGGCGGTGTTCGATACGCAGAAGCTGGAAGACGGTTACAAGGTGCTGCCGATCGCCGAATGGGCGAACCTGAAG
GGCGAAGGCGCGAAGCGTGTGGTGCAGGCCGAGTACAACCAGGCCGGTGATGAAGTCTGGTTCTCGGTCTGGGGTACCAA
GGATGGCGAGTCCGCGCTGGTCGTGGTCGATGACAAGACCCGCAAGCTCAAGACCGTGATCAAGGACCCGCGTCTGATTA
CCCCGACGGGCAAGTTCAACGCGCACAACACACAACACGACGTCTATTGA

Upstream 100 bases:

>100_bases
GCGATGCAGTTCTTCTTCCCCATGATTGGAACATCTGTCGCGCGCCGCGCTCCATGCACGGTGCCGCAGCACAGCATTCC
CCACTCGCTAATGAAAAATC

Downstream 100 bases:

>100_bases
TCAGGGGAAGGAGAATTCGCATGCATCCGTCTACAGTTATCGCCGCCGTGGCACTTGCTGCCGCGCTGCCGGTTACCGCG
TTTGCCAGCCAGGAACTTGC

Product: nitrite reductase

Products: NA

Alternate protein names: Cytochrome cd1; Cytochrome oxidase; Hydroxylamine reductase [H]

Number of amino acids: Translated: 549; Mature: 549

Protein sequence:

>549_residues
MKAKSWMFPALAAMPLFFWSAHGSAQTAPTQNPEPKLTAEEFNHARQIYFERCAGCHGVLRKGATGKPLTPDITRARGTE
YLKTFIKYGSPAGMPNWGTSGDLTDPEVDLMARYIQLDPPTPPEFSLADIEKSRKDIVPVAKRPTRKMNNYNLQNLFSVT
LRDSGEVALIDGDSKQIINIVKTGYAVHISRMSASGRYLYVIGRDARLNLIDLWLPKPDNVAEVKIGLEARSVETSKYKG
YEDKYAVAGSYWPPQYVIMEGDTLKPLKVVSTRGMTVDNEYHPEPRVASIVASHFRPEFVINAKETGKILMVDYSDLKNL
KTTTIDSAKFLHDGGFDSTGRYFLVAANASNKIAVVDTKEDKLAALVDVGKTPHPGRGANFVHPKFGPVWATSHLGDETI
SLIGTDPINHKAQAWKVVETLKGQGGGSLFIKTNPKSHNLWVDTPLNPDAKLNQSVAVFDTQKLEDGYKVLPIAEWANLK
GEGAKRVVQAEYNQAGDEVWFSVWGTKDGESALVVVDDKTRKLKTVIKDPRLITPTGKFNAHNTQHDVY

Sequences:

>Translated_549_residues
MKAKSWMFPALAAMPLFFWSAHGSAQTAPTQNPEPKLTAEEFNHARQIYFERCAGCHGVLRKGATGKPLTPDITRARGTE
YLKTFIKYGSPAGMPNWGTSGDLTDPEVDLMARYIQLDPPTPPEFSLADIEKSRKDIVPVAKRPTRKMNNYNLQNLFSVT
LRDSGEVALIDGDSKQIINIVKTGYAVHISRMSASGRYLYVIGRDARLNLIDLWLPKPDNVAEVKIGLEARSVETSKYKG
YEDKYAVAGSYWPPQYVIMEGDTLKPLKVVSTRGMTVDNEYHPEPRVASIVASHFRPEFVINAKETGKILMVDYSDLKNL
KTTTIDSAKFLHDGGFDSTGRYFLVAANASNKIAVVDTKEDKLAALVDVGKTPHPGRGANFVHPKFGPVWATSHLGDETI
SLIGTDPINHKAQAWKVVETLKGQGGGSLFIKTNPKSHNLWVDTPLNPDAKLNQSVAVFDTQKLEDGYKVLPIAEWANLK
GEGAKRVVQAEYNQAGDEVWFSVWGTKDGESALVVVDDKTRKLKTVIKDPRLITPTGKFNAHNTQHDVY
>Mature_549_residues
MKAKSWMFPALAAMPLFFWSAHGSAQTAPTQNPEPKLTAEEFNHARQIYFERCAGCHGVLRKGATGKPLTPDITRARGTE
YLKTFIKYGSPAGMPNWGTSGDLTDPEVDLMARYIQLDPPTPPEFSLADIEKSRKDIVPVAKRPTRKMNNYNLQNLFSVT
LRDSGEVALIDGDSKQIINIVKTGYAVHISRMSASGRYLYVIGRDARLNLIDLWLPKPDNVAEVKIGLEARSVETSKYKG
YEDKYAVAGSYWPPQYVIMEGDTLKPLKVVSTRGMTVDNEYHPEPRVASIVASHFRPEFVINAKETGKILMVDYSDLKNL
KTTTIDSAKFLHDGGFDSTGRYFLVAANASNKIAVVDTKEDKLAALVDVGKTPHPGRGANFVHPKFGPVWATSHLGDETI
SLIGTDPINHKAQAWKVVETLKGQGGGSLFIKTNPKSHNLWVDTPLNPDAKLNQSVAVFDTQKLEDGYKVLPIAEWANLK
GEGAKRVVQAEYNQAGDEVWFSVWGTKDGESALVVVDDKTRKLKTVIKDPRLITPTGKFNAHNTQHDVY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR011048
- InterPro:   IPR003143 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.7.2.1; =1.7.99.1 [H]

Molecular weight: Translated: 60770; Mature: 60770

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKSWMFPALAAMPLFFWSAHGSAQTAPTQNPEPKLTAEEFNHARQIYFERCAGCHGVL
CCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHHHH
RKGATGKPLTPDITRARGTEYLKTFIKYGSPAGMPNWGTSGDLTDPEVDLMARYIQLDPP
HCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHEEEEECCCC
TPPEFSLADIEKSRKDIVPVAKRPTRKMNNYNLQNLFSVTLRDSGEVALIDGDSKQIINI
CCCCCCHHHHHHHHHCCCCCCCCCCHHCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHH
VKTGYAVHISRMSASGRYLYVIGRDARLNLIDLWLPKPDNVAEVKIGLEARSVETSKYKG
HHCCEEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCEEEEEEECEEECCCHHHCCC
YEDKYAVAGSYWPPQYVIMEGDTLKPLKVVSTRGMTVDNEYHPEPRVASIVASHFRPEFV
CCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCEECCCCCCCCHHHHHHHHHCCCEEE
INAKETGKILMVDYSDLKNLKTTTIDSAKFLHDGGFDSTGRYFLVAANASNKIAVVDTKE
EECCCCCCEEEEEHHHCCCCEEEEECCHHHEECCCCCCCCCEEEEEECCCCEEEEEECCC
DKLAALVDVGKTPHPGRGANFVHPKFGPVWATSHLGDETISLIGTDPINHKAQAWKVVET
CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCHHHHHHHHHH
LKGQGGGSLFIKTNPKSHNLWVDTPLNPDAKLNQSVAVFDTQKLEDGYKVLPIAEWANLK
HCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCEEEEEEHHHCCCCCEEEEEHHHCCCC
GEGAKRVVQAEYNQAGDEVWFSVWGTKDGESALVVVDDKTRKLKTVIKDPRLITPTGKFN
CCCHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHHCCCEEECCCCCCC
AHNTQHDVY
CCCCCCCCC
>Mature Secondary Structure
MKAKSWMFPALAAMPLFFWSAHGSAQTAPTQNPEPKLTAEEFNHARQIYFERCAGCHGVL
CCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHHHH
RKGATGKPLTPDITRARGTEYLKTFIKYGSPAGMPNWGTSGDLTDPEVDLMARYIQLDPP
HCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHEEEEECCCC
TPPEFSLADIEKSRKDIVPVAKRPTRKMNNYNLQNLFSVTLRDSGEVALIDGDSKQIINI
CCCCCCHHHHHHHHHCCCCCCCCCCHHCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHH
VKTGYAVHISRMSASGRYLYVIGRDARLNLIDLWLPKPDNVAEVKIGLEARSVETSKYKG
HHCCEEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCEEEEEEECEEECCCHHHCCC
YEDKYAVAGSYWPPQYVIMEGDTLKPLKVVSTRGMTVDNEYHPEPRVASIVASHFRPEFV
CCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCEECCCCCCCCHHHHHHHHHCCCEEE
INAKETGKILMVDYSDLKNLKTTTIDSAKFLHDGGFDSTGRYFLVAANASNKIAVVDTKE
EECCCCCCEEEEEHHHCCCCEEEEECCHHHEECCCCCCCCCEEEEEECCCCEEEEEECCC
DKLAALVDVGKTPHPGRGANFVHPKFGPVWATSHLGDETISLIGTDPINHKAQAWKVVET
CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCHHHHHHHHHH
LKGQGGGSLFIKTNPKSHNLWVDTPLNPDAKLNQSVAVFDTQKLEDGYKVLPIAEWANLK
HCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCEEEEEEHHHCCCCCEEEEEHHHCCCC
GEGAKRVVQAEYNQAGDEVWFSVWGTKDGESALVVVDDKTRKLKTVIKDPRLITPTGKFN
CCCHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCCHHHHHHHCCCEEECCCCCCC
AHNTQHDVY
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2506077; 10984043; 2155133; 2152881; 9331415; 9760233; 10329702; 11226222; 11563915 [H]