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The map label for this gene is yfdE [H]

Identifier: 94311880

GI number: 94311880

Start: 3205205

End: 3206455

Strand: Direct

Name: yfdE [H]

Synonym: Rmet_2948

Alternate gene names: 94311880

Gene position: 3205205-3206455 (Clockwise)

Preceding gene: 94311879

Following gene: 94311889

Centisome position: 81.6

GC content: 63.55

Gene sequence:

>1251_bases
ATGCAGCAGACCATTGAACCATCCAAGGACACCGAACTGCCTCTCGACGGCGTGCGCGTGCTTGACCTGTCCCGCGTCTT
CGCTGGCCCGCTGTGCGGGCAAGTCCTGGCCGACTTCGGTGCCGAGGTGGTCAAGGTGGAACATCCCGGCCGTGGCGATG
ACACCCGTGATTGGGGGATGCGCATTGGCAAGACGGAGACGACTTACTACAACAGCATGAACCGCAACAAGCGGTCCATC
ACGCTGGATCTGCAGAGCAAGGAAGGCGTGCAGATCGTCTACGAACTGCTGCCGAAGTTCGACGTCGTCATCCACAACTT
CAAGACGGGCGGCGCCGAGAAGCTGGGCCTGGGCTACGAGCAGCTCAAGGCCATCAAGCCTGACCTCATCTACTGCGCCA
TTTCTGGATACGACACCAGCGGCCCGGAAGCGAAACGCCCCGGCTACGACCTCGTCATCCAGGGCGAGGCCGGCCTCATG
GCGCTCAATGGCGAGGCCGATCAGCCGCCGTTGAAATTCGGCGTTGCGGTCGTCGACCTCATGACCGGCATGTATGCGGC
ACAAGCCGTACTGGCCGCCCTCTTCCGCCGCGAGCGAAAGGGCCTGGGCCAACTGATCGAGATGGCGCTGTACGACTGCG
GCGTGATGGTGACGGGCTACTACGGCCTGGATGCCATGCTGCTGGGGCGCGACCCGGCACGCTACGGGAACGCCCATCCG
TCCATCGTGCCCTACGGCATGTTCGAGGCTGCCGATGGTCCACTGATCATCGCGGTGGGAAACAACAACCAGTTCGACAA
GTTCTGCCGCCAGGTCATCGAGCGCCCCGATATCGTCGAGGATCCACGCTACGCCACGAACGTCGAGCGCGCGAAGAACC
GCGTCACCCTGACACCGCTGATCACGGGTCTGATCCATGCGTTTCCCCGCGACCTTCTGCTGGAACGCATGACCGCTTGC
GGTATCCCGTGCGGCAGGGTGGCCGGGCTGCACGAGGCACTGACCAGCGAACGGACTCGCAGGGGTGGGCTGATGCGTGA
GATGCCGCATCCGGTGGCAGGCACGACGCATGTATTTGCGCCGCCGTACCGTCTGGACGGAAAGCGCCCGCCGATTCGCA
ATGCACCGCCGACGCTTGGCGAGGGCACGCGCGCGGTATTGCAGAGTCTTCTGGATATGAGTGACGCGCAACTGCAAGAA
CTGCAGGCGCTCGGCGTTCTCACACTGCCCGAGGCACCTGCCAACTCCTGA

Upstream 100 bases:

>100_bases
ATTGTTCTAATTATTTATGCGGGCAAGAATGTCCGATTAACCACAAGCAGATGATCGCCACGTCACGGCATACGTGAATG
GCGGAGGCAGGAGACAAGCC

Downstream 100 bases:

>100_bases
GTCTTCTCCGCCCGCCGGCATGGTCCGCGCAGGACCGCCCGGCGAAGGGGACAGGCATTGGAAGCCGTTTCAAGACGATT
GTGGCGTCGTTGCGGGGCCT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MQQTIEPSKDTELPLDGVRVLDLSRVFAGPLCGQVLADFGAEVVKVEHPGRGDDTRDWGMRIGKTETTYYNSMNRNKRSI
TLDLQSKEGVQIVYELLPKFDVVIHNFKTGGAEKLGLGYEQLKAIKPDLIYCAISGYDTSGPEAKRPGYDLVIQGEAGLM
ALNGEADQPPLKFGVAVVDLMTGMYAAQAVLAALFRRERKGLGQLIEMALYDCGVMVTGYYGLDAMLLGRDPARYGNAHP
SIVPYGMFEAADGPLIIAVGNNNQFDKFCRQVIERPDIVEDPRYATNVERAKNRVTLTPLITGLIHAFPRDLLLERMTAC
GIPCGRVAGLHEALTSERTRRGGLMREMPHPVAGTTHVFAPPYRLDGKRPPIRNAPPTLGEGTRAVLQSLLDMSDAQLQE
LQALGVLTLPEAPANS

Sequences:

>Translated_416_residues
MQQTIEPSKDTELPLDGVRVLDLSRVFAGPLCGQVLADFGAEVVKVEHPGRGDDTRDWGMRIGKTETTYYNSMNRNKRSI
TLDLQSKEGVQIVYELLPKFDVVIHNFKTGGAEKLGLGYEQLKAIKPDLIYCAISGYDTSGPEAKRPGYDLVIQGEAGLM
ALNGEADQPPLKFGVAVVDLMTGMYAAQAVLAALFRRERKGLGQLIEMALYDCGVMVTGYYGLDAMLLGRDPARYGNAHP
SIVPYGMFEAADGPLIIAVGNNNQFDKFCRQVIERPDIVEDPRYATNVERAKNRVTLTPLITGLIHAFPRDLLLERMTAC
GIPCGRVAGLHEALTSERTRRGGLMREMPHPVAGTTHVFAPPYRLDGKRPPIRNAPPTLGEGTRAVLQSLLDMSDAQLQE
LQALGVLTLPEAPANS
>Mature_416_residues
MQQTIEPSKDTELPLDGVRVLDLSRVFAGPLCGQVLADFGAEVVKVEHPGRGDDTRDWGMRIGKTETTYYNSMNRNKRSI
TLDLQSKEGVQIVYELLPKFDVVIHNFKTGGAEKLGLGYEQLKAIKPDLIYCAISGYDTSGPEAKRPGYDLVIQGEAGLM
ALNGEADQPPLKFGVAVVDLMTGMYAAQAVLAALFRRERKGLGQLIEMALYDCGVMVTGYYGLDAMLLGRDPARYGNAHP
SIVPYGMFEAADGPLIIAVGNNNQFDKFCRQVIERPDIVEDPRYATNVERAKNRVTLTPLITGLIHAFPRDLLLERMTAC
GIPCGRVAGLHEALTSERTRRGGLMREMPHPVAGTTHVFAPPYRLDGKRPPIRNAPPTLGEGTRAVLQSLLDMSDAQLQE
LQALGVLTLPEAPANS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=394, Percent_Identity=36.8020304568528, Blast_Score=283, Evalue=2e-76,
Organism=Homo sapiens, GI300863124, Length=420, Percent_Identity=35.7142857142857, Blast_Score=273, Evalue=2e-73,
Organism=Homo sapiens, GI300863126, Length=394, Percent_Identity=33.502538071066, Blast_Score=231, Evalue=9e-61,
Organism=Homo sapiens, GI13376042, Length=420, Percent_Identity=32.6190476190476, Blast_Score=231, Evalue=1e-60,
Organism=Homo sapiens, GI42794625, Length=255, Percent_Identity=29.8039215686275, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI266456254, Length=250, Percent_Identity=30.8, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI266458393, Length=259, Percent_Identity=29.7297297297297, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI266458397, Length=255, Percent_Identity=29.8039215686275, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI42822893, Length=139, Percent_Identity=36.6906474820144, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI266458395, Length=139, Percent_Identity=36.6906474820144, Blast_Score=89, Evalue=8e-18,
Organism=Escherichia coli, GI87082093, Length=340, Percent_Identity=32.6470588235294, Blast_Score=225, Evalue=4e-60,
Organism=Escherichia coli, GI1788717, Length=399, Percent_Identity=30.3258145363409, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1786222, Length=419, Percent_Identity=24.1050119331742, Blast_Score=89, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=192, Percent_Identity=27.6041666666667, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=189, Percent_Identity=28.042328042328, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=39.25, Blast_Score=288, Evalue=5e-78,
Organism=Drosophila melanogaster, GI24585488, Length=404, Percent_Identity=25.4950495049505, Blast_Score=108, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45462; Mature: 45462

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQTIEPSKDTELPLDGVRVLDLSRVFAGPLCGQVLADFGAEVVKVEHPGRGDDTRDWGM
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCCCCHHHCC
RIGKTETTYYNSMNRNKRSITLDLQSKEGVQIVYELLPKFDVVIHNFKTGGAEKLGLGYE
CCCCCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCHHHCCCHH
QLKAIKPDLIYCAISGYDTSGPEAKRPGYDLVIQGEAGLMALNGEADQPPLKFGVAVVDL
HHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHH
MTGMYAAQAVLAALFRRERKGLGQLIEMALYDCGVMVTGYYGLDAMLLGRDPARYGNAHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCHHCCCCCC
SIVPYGMFEAADGPLIIAVGNNNQFDKFCRQVIERPDIVEDPRYATNVERAKNRVTLTPL
CEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEHHHH
ITGLIHAFPRDLLLERMTACGIPCGRVAGLHEALTSERTRRGGLMREMPHPVAGTTHVFA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEC
PPYRLDGKRPPIRNAPPTLGEGTRAVLQSLLDMSDAQLQELQALGVLTLPEAPANS
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCCC
>Mature Secondary Structure
MQQTIEPSKDTELPLDGVRVLDLSRVFAGPLCGQVLADFGAEVVKVEHPGRGDDTRDWGM
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCCCCHHHCC
RIGKTETTYYNSMNRNKRSITLDLQSKEGVQIVYELLPKFDVVIHNFKTGGAEKLGLGYE
CCCCCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCHHHCCCHH
QLKAIKPDLIYCAISGYDTSGPEAKRPGYDLVIQGEAGLMALNGEADQPPLKFGVAVVDL
HHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHH
MTGMYAAQAVLAALFRRERKGLGQLIEMALYDCGVMVTGYYGLDAMLLGRDPARYGNAHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCHHCCCCCC
SIVPYGMFEAADGPLIIAVGNNNQFDKFCRQVIERPDIVEDPRYATNVERAKNRVTLTPL
CEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEHHHH
ITGLIHAFPRDLLLERMTACGIPCGRVAGLHEALTSERTRRGGLMREMPHPVAGTTHVFA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEC
PPYRLDGKRPPIRNAPPTLGEGTRAVLQSLLDMSDAQLQELQALGVLTLPEAPANS
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]