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The map label for this gene is sodC [H]

Identifier: 94311689

GI number: 94311689

Start: 2998267

End: 2998842

Strand: Reverse

Name: sodC [H]

Synonym: Rmet_2757

Alternate gene names: 94311689

Gene position: 2998842-2998267 (Counterclockwise)

Preceding gene: 94311690

Following gene: 94311688

Centisome position: 76.34

GC content: 67.19

Gene sequence:

>576_bases
ATGAAACGTGTACTTTTCGGTTTGACGATGGGCGCTGCCGCACTGGCTGTGGCGGGTTGCTCGAGCTGGGGCTGGGGTTC
GTCCAGCAGCAGTAGCAGCAGTGGCACGGCGGCAACCAGCGCGTCCACGAAGGCCGCCGCAGCGCTGAGCCCCAAGAGCG
GCACGAATACCGCGGGACGCGTCACGTTCGACCAGCAGGCGGGCGGTGGCGTGATGGTGGTGGTATCGGTGACCGGCCTG
CCGCCAGGCACGACACATGGCTTCCATATCCACGAGAAGGGTGACTGCTCCGCGCCCGACGCGATGAGCGCGGGTGGGCA
CTTCAACCCGGCAGGCAAGCCGCATGGCCAGATGACGATGCCCGATCATCATGCCGGCGACATGAACAACCTCGTCGCGG
ACTCCAGCGGCAACGCGCGCGTGCAGTTCATCATGCCGGACGTGACCGTGGCACCCGGCCCGAACAGCGTGGTTGGCCGC
GCCGTCGTTGTCCACAAGGATGCCGACGACTATCGCACCCAGCCCACCGGCAACTCGGGCGGCCGCATCGCCTGCGGTGT
GATCGCCGCCTCCTGA

Upstream 100 bases:

>100_bases
TGATCATGTGCATTGGCACGGCGTTGCAGTTTGCGGCAGTCGTATGTGCAGGTCAGGCGTACAATCGCCCGGGCTTTTAA
CCGCAAGAGGAGGGCTCGGC

Downstream 100 bases:

>100_bases
TCCCTCCAGATAGCATCCGCTGTAGCTGGCCCGACCTTCGGAAGGGCCAGCCCGCCTCCCACATGTCACTGCGCCCCGAA
CTGACCCATGCCAGCGTACC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKRVLFGLTMGAAALAVAGCSSWGWGSSSSSSSSGTAATSASTKAAAALSPKSGTNTAGRVTFDQQAGGGVMVVVSVTGL
PPGTTHGFHIHEKGDCSAPDAMSAGGHFNPAGKPHGQMTMPDHHAGDMNNLVADSSGNARVQFIMPDVTVAPGPNSVVGR
AVVVHKDADDYRTQPTGNSGGRIACGVIAAS

Sequences:

>Translated_191_residues
MKRVLFGLTMGAAALAVAGCSSWGWGSSSSSSSSGTAATSASTKAAAALSPKSGTNTAGRVTFDQQAGGGVMVVVSVTGL
PPGTTHGFHIHEKGDCSAPDAMSAGGHFNPAGKPHGQMTMPDHHAGDMNNLVADSSGNARVQFIMPDVTVAPGPNSVVGR
AVVVHKDADDYRTQPTGNSGGRIACGVIAAS
>Mature_191_residues
MKRVLFGLTMGAAALAVAGCSSWGWGSSSSSSSSGTAATSASTKAAAALSPKSGTNTAGRVTFDQQAGGGVMVVVSVTGL
PPGTTHGFHIHEKGDCSAPDAMSAGGHFNPAGKPHGQMTMPDHHAGDMNNLVADSSGNARVQFIMPDVTVAPGPNSVVGR
AVVVHKDADDYRTQPTGNSGGRIACGVIAAS

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=154, Percent_Identity=40.9090909090909, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI4826665, Length=153, Percent_Identity=37.2549019607843, Blast_Score=82, Evalue=3e-16,
Organism=Escherichia coli, GI1787934, Length=165, Percent_Identity=34.5454545454545, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71981876, Length=163, Percent_Identity=39.8773006134969, Blast_Score=95, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71981879, Length=158, Percent_Identity=39.873417721519, Blast_Score=92, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17554806, Length=151, Percent_Identity=38.4105960264901, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17537871, Length=158, Percent_Identity=40.5063291139241, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322564, Length=152, Percent_Identity=40.1315789473684, Blast_Score=84, Evalue=1e-17,
Organism=Drosophila melanogaster, GI85725006, Length=144, Percent_Identity=44.4444444444444, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI116007680, Length=144, Percent_Identity=44.4444444444444, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45551081, Length=155, Percent_Identity=43.2258064516129, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24652737, Length=155, Percent_Identity=43.2258064516129, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17136496, Length=140, Percent_Identity=42.1428571428571, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI281363087, Length=120, Percent_Identity=44.1666666666667, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24652342, Length=120, Percent_Identity=44.1666666666667, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 18946; Mature: 18946

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVLFGLTMGAAALAVAGCSSWGWGSSSSSSSSGTAATSASTKAAAALSPKSGTNTAGR
CCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCCCEE
VTFDQQAGGGVMVVVSVTGLPPGTTHGFHIHEKGDCSAPDAMSAGGHFNPAGKPHGQMTM
EEECCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDHHAGDMNNLVADSSGNARVQFIMPDVTVAPGPNSVVGRAVVVHKDADDYRTQPTGNSG
CCCCCCCCCCEEECCCCCEEEEEEECCEEECCCCCCCCCEEEEEEECCHHHCCCCCCCCC
GRIACGVIAAS
CEEEEEEEECC
>Mature Secondary Structure
MKRVLFGLTMGAAALAVAGCSSWGWGSSSSSSSSGTAATSASTKAAAALSPKSGTNTAGR
CCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCCCEE
VTFDQQAGGGVMVVVSVTGLPPGTTHGFHIHEKGDCSAPDAMSAGGHFNPAGKPHGQMTM
EEECCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDHHAGDMNNLVADSSGNARVQFIMPDVTVAPGPNSVVGRAVVVHKDADDYRTQPTGNSG
CCCCCCCCCCEEECCCCCEEEEEEECCEEECCCCCCCCCEEEEEEECCHHHCCCCCCCCC
GRIACGVIAAS
CEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]