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The map label for this gene is fdhD [H]

Identifier: 94311688

GI number: 94311688

Start: 2997368

End: 2998204

Strand: Reverse

Name: fdhD [H]

Synonym: Rmet_2756

Alternate gene names: 94311688

Gene position: 2998204-2997368 (Counterclockwise)

Preceding gene: 94311689

Following gene: 94311687

Centisome position: 76.33

GC content: 64.4

Gene sequence:

>837_bases
ATGTCACTGCGCCCCGAACTGACCCATGCCAGCGTACCCCTGATCGAAGAGGTGGCTGTCCTCGACGAGCAAGGCAGGGA
ACGTCCGGCCTGGCTGCCAGGCGAGCGCCCGCTGACGGTCTATCTGGACAAACGCGAACTGGTCACGCTGATGACGCTGG
GCGGCGCGCCGGAGCATCTCGTCCTGGGTTATCTGCGCAATCAGCGACTGGTGGAGTCGATCGAGCAGATTGCTTCGGTC
CAGGTGGACTGGGAAACCGAGTCGGTGGCAGTGACCACCCGTTCGGGGGTCGATCGCATCGAGGAGCGCACCGCGCGCCG
CGTGGTGACCACGGGCTGTGGGCAGGGCACGGTGTTCGGTTCGCTGATGGACGAGGTCGACACCATCGCGCTGCCCCCGG
ACGCCCGGCTCGACCAGGAAACGCTGTACGCGATCGTCGATACCATCCGGCTTCAGCAATCGGTCTACAAGCAGGCCGGC
TCGGTTCACGGCTGCGCCTTGTTCCGGGGCAGCGAGTTGCTGACCTTCGTCGAGGACGTGGGCCGCCACAACGCCGTGGA
TGCCATCGCCGGGTGGATGTGGCTCGAGGACATGAGCGGCGCCGACAAGATTTTCTACACCACGGGCCGACTGACGTCGG
AAATGGTCATCAAGGGCGCCCAGATGGGCATTCCGTTCCTGTTATCGCGTTCGGGTGTGACGCAAATGGGTTACCAGATG
GCCAAGCGTGTCGGAATGACGCTATTCGCGCGCTGCACCGGCAAGCATTTCCTGCTCTACACAGGGCGGGAGCGGTTCCG
CCACACACCGACCGAAGCGCTGGTACCGGCGGTCTAG

Upstream 100 bases:

>100_bases
GCGGCCGCATCGCCTGCGGTGTGATCGCCGCCTCCTGATCCCTCCAGATAGCATCCGCTGTAGCTGGCCCGACCTTCGGA
AGGGCCAGCCCGCCTCCCAC

Downstream 100 bases:

>100_bases
GAATTCCGCTGCGCGGCACCAGATCGCAACAGAAGCCGGAACAAGAGCGCCAGAAGCGATTGGTTGTACAATGCGCCCCA
ATCCAGCGGCAGCCCGCCGC

Product: Formate dehydrogenase, subunit FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSLRPELTHASVPLIEEVAVLDEQGRERPAWLPGERPLTVYLDKRELVTLMTLGGAPEHLVLGYLRNQRLVESIEQIASV
QVDWETESVAVTTRSGVDRIEERTARRVVTTGCGQGTVFGSLMDEVDTIALPPDARLDQETLYAIVDTIRLQQSVYKQAG
SVHGCALFRGSELLTFVEDVGRHNAVDAIAGWMWLEDMSGADKIFYTTGRLTSEMVIKGAQMGIPFLLSRSGVTQMGYQM
AKRVGMTLFARCTGKHFLLYTGRERFRHTPTEALVPAV

Sequences:

>Translated_278_residues
MSLRPELTHASVPLIEEVAVLDEQGRERPAWLPGERPLTVYLDKRELVTLMTLGGAPEHLVLGYLRNQRLVESIEQIASV
QVDWETESVAVTTRSGVDRIEERTARRVVTTGCGQGTVFGSLMDEVDTIALPPDARLDQETLYAIVDTIRLQQSVYKQAG
SVHGCALFRGSELLTFVEDVGRHNAVDAIAGWMWLEDMSGADKIFYTTGRLTSEMVIKGAQMGIPFLLSRSGVTQMGYQM
AKRVGMTLFARCTGKHFLLYTGRERFRHTPTEALVPAV
>Mature_277_residues
SLRPELTHASVPLIEEVAVLDEQGRERPAWLPGERPLTVYLDKRELVTLMTLGGAPEHLVLGYLRNQRLVESIEQIASVQ
VDWETESVAVTTRSGVDRIEERTARRVVTTGCGQGTVFGSLMDEVDTIALPPDARLDQETLYAIVDTIRLQQSVYKQAGS
VHGCALFRGSELLTFVEDVGRHNAVDAIAGWMWLEDMSGADKIFYTTGRLTSEMVIKGAQMGIPFLLSRSGVTQMGYQMA
KRVGMTLFARCTGKHFLLYTGRERFRHTPTEALVPAV

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30883; Mature: 30752

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRPELTHASVPLIEEVAVLDEQGRERPAWLPGERPLTVYLDKRELVTLMTLGGAPEHL
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHEEEEEECCCCCHHH
VLGYLRNQRLVESIEQIASVQVDWETESVAVTTRSGVDRIEERTARRVVTTGCGQGTVFG
HHHHHHHHHHHHHHHHHHCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHH
SLMDEVDTIALPPDARLDQETLYAIVDTIRLQQSVYKQAGSVHGCALFRGSELLTFVEDV
HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
GRHNAVDAIAGWMWLEDMSGADKIFYTTGRLTSEMVIKGAQMGIPFLLSRSGVTQMGYQM
CCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHH
AKRVGMTLFARCTGKHFLLYTGRERFRHTPTEALVPAV
HHHHHHHHEEEECCCEEEEEECCHHHCCCCHHHHCCCC
>Mature Secondary Structure 
SLRPELTHASVPLIEEVAVLDEQGRERPAWLPGERPLTVYLDKRELVTLMTLGGAPEHL
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHEEEEEECCCCCHHH
VLGYLRNQRLVESIEQIASVQVDWETESVAVTTRSGVDRIEERTARRVVTTGCGQGTVFG
HHHHHHHHHHHHHHHHHHCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHH
SLMDEVDTIALPPDARLDQETLYAIVDTIRLQQSVYKQAGSVHGCALFRGSELLTFVEDV
HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
GRHNAVDAIAGWMWLEDMSGADKIFYTTGRLTSEMVIKGAQMGIPFLLSRSGVTQMGYQM
CCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHH
AKRVGMTLFARCTGKHFLLYTGRERFRHTPTEALVPAV
HHHHHHHHEEEECCCEEEEEECCHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]