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The map label for this gene is capD [H]

Identifier: 94311655

GI number: 94311655

Start: 2957898

End: 2959847

Strand: Reverse

Name: capD [H]

Synonym: Rmet_2723

Alternate gene names: 94311655

Gene position: 2959847-2957898 (Counterclockwise)

Preceding gene: 94311656

Following gene: 335055626

Centisome position: 75.35

GC content: 59.85

Gene sequence:

>1950_bases
GTGAAGAATCTTACGGTTCCGCTACTCGCGCTGCCCCGGTCGGCCAAGCGCGTGGTTGTCGTTGCGCTGGATTTGATCCT
GGCGCTGGTATCCGTCTGGGTGGCGTTCTATCTGCGCATAGACCAAACGGGACTGCCAATCCTGCAGCAGGAGTACGTCT
ATTTTCTCTCGCCTTTGCTGGCCTTCCCGATCTTCGTTCGAATGGGTTTGTACAGAGCGATCTTTCGGTACACAGGAATG
GCCGCGCTTGCTAGCACTGCGAAGGCCGTGGGTCTCTATGGCGTATTGTTCTTCAGTGCGCTGCTTCTCTTGAAGCTCGA
TGGTGTACCGCGCAGCATTGGCCTGATCCAGCCGATGCTGTTCCTGTTGCTGGTTGGGGCGAGTCGTGCTCTGGCGCGCT
TCTGGCTAGCGGGGACGGCGGCGAAGGTGCGTGCGCACGAAGGACGGTTGTTGATCTATGGTGCCGGCGACGCGGGCGTG
CAAACTGCTTCGGCGCTTGCCGTTACGCATCAGTTTGTGCTGTTGGGGTTCATCGATGATGATCGGGCCAAGATCGGCCG
TACGATCAACGGGCTCGATATCTTCGGTCCGGATGACGTGCCTGAAGCTGTCGAGCGTATGGGTGTCACCGACATCCTGC
TTGCGATTCCATCCATGGGCCGCGCCCAGCGCAACGCCGTAATCGACAAGCTGCGCGCGCTGCCCGTGCACGTTCGAACG
CTGCCTGGTATGGTGGATCTGGCATCGGGCCGTGTGACGATACGCGATCTGCAGGAACTCGATATCGAGGACTTGCTTGG
CCGCGCACCGGTGCCACCCGATGCGGCATTGTTGGCGAAGAACCTTGCTGACAAGACGGTGCTCGTGACCGGGGCAGGCG
GCAGCATCGGCAGTGAACTATGTCGCCAGATCATGCTGGAGCGGCCGCGTCGGCTGGTGCTGGTCGAACACAACGAGTTT
GGGTTGTATTCGATTCACCAAGAGCTTGAGCGCTTGCGCGACGAGCATCGCCTGCAAACCGAGGTTGTTCCGCTACTGGC
CAGTGTGGTCAATTTGAGGCGTTTGCGCGAGATCTGCGGGCTGTATCGACCTGCCACGGTTTATCACGCCGCCGCATACA
AGCATGTGCCGTTGGTCGAGTGCAACGCGGCGGAAGGGGTCATGAACAACGTGTTCGGTACGCTGAACATGGCACGCGCC
GCTATGGAAAGCCAGGCTGAGTACTTCGTGCTGGTGTCCACGGACAAGGCGGTTCGACCCACTAATGTAATGGGTGCTTC
CAAGCGCATGGCGGAGCTGGTGTTGCAGGCAATGGCAGCCCGGCAATCGGTCGACTTTGGACTGCTCGATGTTGAGAGCG
AGGAGGCTGTGCCGAATCGCACAGTTTTCGCGATGGTGCGATTTGGCAATGTGCTAGGCAGCAGCGGAAGCGTTGTCCCT
CTGTTCAGACGTCAATTGCTGGAAGGCGGGCCGTTGACCGTGACCCACGAGAAGGTGACGCGTTACTTCATGACTATCCC
GGAGGCTGCCCAACTGGTGCTGCAGGCTGGCGCCATGGCCCATGGCGGCGAGGTGTTCGTTCTGGACATGGGCCAGCCTG
TCAAGATCATGGATCTGGCGCGACGCATGGTTCAGCTTTCTGGCATGACGGTGTGCGACGATCAGCATCCGGATGGCGAT
ATCGAGATCCGCGTGACAGGTCTGCGCCCCGGCGAGAAGCTCTATGAAGAATTGCTGATCGGCGATAACCCCGAAGGTAC
GGCCCATGAGCGGATCATGAAGGCGCGAGAGGATTACGTGCCGTGGCCGGAATTTGCGCCCGTGCTTGCATCCATGCGTG
TGGCGGCCGAGCAGAGCGACGAGAAGCAGATCAAGGAAATCCTGGGCCGTCAGGTCCACGGATATGGTCCGCAGGCAGAG
GGCAAGGCTGCGAACGCCTTGCTGGTGTAA

Upstream 100 bases:

>100_bases
GCGAGGACAGCCTGATGTTCCTTGTACATCCCACCTTGACCAAGGATGAGATTGCAAAGACATGCCGTGTGCTGACTGAC
GTCCTCGGGCGGGCCAGCCG

Downstream 100 bases:

>100_bases
GGGGAGTCGTGGAATCCGCTGGTTTCGCGCGCTTTGGTGCGCGAAACCAGCTTGGTGTGCCGCGTCGCGCGTGCCGACGC
GGCGCCGGGCGCTTCACGAT

Product: polysaccharide biosynthesis protein CapD-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 649

Protein sequence:

>649_residues
MKNLTVPLLALPRSAKRVVVVALDLILALVSVWVAFYLRIDQTGLPILQQEYVYFLSPLLAFPIFVRMGLYRAIFRYTGM
AALASTAKAVGLYGVLFFSALLLLKLDGVPRSIGLIQPMLFLLLVGASRALARFWLAGTAAKVRAHEGRLLIYGAGDAGV
QTASALAVTHQFVLLGFIDDDRAKIGRTINGLDIFGPDDVPEAVERMGVTDILLAIPSMGRAQRNAVIDKLRALPVHVRT
LPGMVDLASGRVTIRDLQELDIEDLLGRAPVPPDAALLAKNLADKTVLVTGAGGSIGSELCRQIMLERPRRLVLVEHNEF
GLYSIHQELERLRDEHRLQTEVVPLLASVVNLRRLREICGLYRPATVYHAAAYKHVPLVECNAAEGVMNNVFGTLNMARA
AMESQAEYFVLVSTDKAVRPTNVMGASKRMAELVLQAMAARQSVDFGLLDVESEEAVPNRTVFAMVRFGNVLGSSGSVVP
LFRRQLLEGGPLTVTHEKVTRYFMTIPEAAQLVLQAGAMAHGGEVFVLDMGQPVKIMDLARRMVQLSGMTVCDDQHPDGD
IEIRVTGLRPGEKLYEELLIGDNPEGTAHERIMKAREDYVPWPEFAPVLASMRVAAEQSDEKQIKEILGRQVHGYGPQAE
GKAANALLV

Sequences:

>Translated_649_residues
MKNLTVPLLALPRSAKRVVVVALDLILALVSVWVAFYLRIDQTGLPILQQEYVYFLSPLLAFPIFVRMGLYRAIFRYTGM
AALASTAKAVGLYGVLFFSALLLLKLDGVPRSIGLIQPMLFLLLVGASRALARFWLAGTAAKVRAHEGRLLIYGAGDAGV
QTASALAVTHQFVLLGFIDDDRAKIGRTINGLDIFGPDDVPEAVERMGVTDILLAIPSMGRAQRNAVIDKLRALPVHVRT
LPGMVDLASGRVTIRDLQELDIEDLLGRAPVPPDAALLAKNLADKTVLVTGAGGSIGSELCRQIMLERPRRLVLVEHNEF
GLYSIHQELERLRDEHRLQTEVVPLLASVVNLRRLREICGLYRPATVYHAAAYKHVPLVECNAAEGVMNNVFGTLNMARA
AMESQAEYFVLVSTDKAVRPTNVMGASKRMAELVLQAMAARQSVDFGLLDVESEEAVPNRTVFAMVRFGNVLGSSGSVVP
LFRRQLLEGGPLTVTHEKVTRYFMTIPEAAQLVLQAGAMAHGGEVFVLDMGQPVKIMDLARRMVQLSGMTVCDDQHPDGD
IEIRVTGLRPGEKLYEELLIGDNPEGTAHERIMKAREDYVPWPEFAPVLASMRVAAEQSDEKQIKEILGRQVHGYGPQAE
GKAANALLV
>Mature_649_residues
MKNLTVPLLALPRSAKRVVVVALDLILALVSVWVAFYLRIDQTGLPILQQEYVYFLSPLLAFPIFVRMGLYRAIFRYTGM
AALASTAKAVGLYGVLFFSALLLLKLDGVPRSIGLIQPMLFLLLVGASRALARFWLAGTAAKVRAHEGRLLIYGAGDAGV
QTASALAVTHQFVLLGFIDDDRAKIGRTINGLDIFGPDDVPEAVERMGVTDILLAIPSMGRAQRNAVIDKLRALPVHVRT
LPGMVDLASGRVTIRDLQELDIEDLLGRAPVPPDAALLAKNLADKTVLVTGAGGSIGSELCRQIMLERPRRLVLVEHNEF
GLYSIHQELERLRDEHRLQTEVVPLLASVVNLRRLREICGLYRPATVYHAAAYKHVPLVECNAAEGVMNNVFGTLNMARA
AMESQAEYFVLVSTDKAVRPTNVMGASKRMAELVLQAMAARQSVDFGLLDVESEEAVPNRTVFAMVRFGNVLGSSGSVVP
LFRRQLLEGGPLTVTHEKVTRYFMTIPEAAQLVLQAGAMAHGGEVFVLDMGQPVKIMDLARRMVQLSGMTVCDDQHPDGD
IEIRVTGLRPGEKLYEELLIGDNPEGTAHERIMKAREDYVPWPEFAPVLASMRVAAEQSDEKQIKEILGRQVHGYGPQAE
GKAANALLV

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 71011; Mature: 71011

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLTVPLLALPRSAKRVVVVALDLILALVSVWVAFYLRIDQTGLPILQQEYVYFLSPLL
CCCCCEEHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AFPIFVRMGLYRAIFRYTGMAALASTAKAVGLYGVLFFSALLLLKLDGVPRSIGLIQPML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
FLLLVGASRALARFWLAGTAAKVRAHEGRLLIYGAGDAGVQTASALAVTHQFVLLGFIDD
HHHHHCCHHHHHHHHHHCCHHHEEECCCEEEEEECCCCCHHHHHHHHHHHHEEEEEEECC
DRAKIGRTINGLDIFGPDDVPEAVERMGVTDILLAIPSMGRAQRNAVIDKLRALPVHVRT
CHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEC
LPGMVDLASGRVTIRDLQELDIEDLLGRAPVPPDAALLAKNLADKTVLVTGAGGSIGSEL
CCCCEECCCCCEEEHHHHHCCHHHHHCCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHH
CRQIMLERPRRLVLVEHNEFGLYSIHQELERLRDEHRLQTEVVPLLASVVNLRRLREICG
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LYRPATVYHAAAYKHVPLVECNAAEGVMNNVFGTLNMARAAMESQAEYFVLVSTDKAVRP
CCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
TNVMGASKRMAELVLQAMAARQSVDFGLLDVESEEAVPNRTVFAMVRFGNVLGSSGSVVP
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHH
LFRRQLLEGGPLTVTHEKVTRYFMTIPEAAQLVLQAGAMAHGGEVFVLDMGQPVKIMDLA
HHHHHHHCCCCEEEEHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHH
RRMVQLSGMTVCDDQHPDGDIEIRVTGLRPGEKLYEELLIGDNPEGTAHERIMKAREDYV
HHHHHHCCCEEECCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
PWPEFAPVLASMRVAAEQSDEKQIKEILGRQVHGYGPQAEGKAANALLV
CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNLTVPLLALPRSAKRVVVVALDLILALVSVWVAFYLRIDQTGLPILQQEYVYFLSPLL
CCCCCEEHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AFPIFVRMGLYRAIFRYTGMAALASTAKAVGLYGVLFFSALLLLKLDGVPRSIGLIQPML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
FLLLVGASRALARFWLAGTAAKVRAHEGRLLIYGAGDAGVQTASALAVTHQFVLLGFIDD
HHHHHCCHHHHHHHHHHCCHHHEEECCCEEEEEECCCCCHHHHHHHHHHHHEEEEEEECC
DRAKIGRTINGLDIFGPDDVPEAVERMGVTDILLAIPSMGRAQRNAVIDKLRALPVHVRT
CHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEC
LPGMVDLASGRVTIRDLQELDIEDLLGRAPVPPDAALLAKNLADKTVLVTGAGGSIGSEL
CCCCEECCCCCEEEHHHHHCCHHHHHCCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHH
CRQIMLERPRRLVLVEHNEFGLYSIHQELERLRDEHRLQTEVVPLLASVVNLRRLREICG
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LYRPATVYHAAAYKHVPLVECNAAEGVMNNVFGTLNMARAAMESQAEYFVLVSTDKAVRP
CCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
TNVMGASKRMAELVLQAMAARQSVDFGLLDVESEEAVPNRTVFAMVRFGNVLGSSGSVVP
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHH
LFRRQLLEGGPLTVTHEKVTRYFMTIPEAAQLVLQAGAMAHGGEVFVLDMGQPVKIMDLA
HHHHHHHCCCCEEEEHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHH
RRMVQLSGMTVCDDQHPDGDIEIRVTGLRPGEKLYEELLIGDNPEGTAHERIMKAREDYV
HHHHHHCCCEEECCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
PWPEFAPVLASMRVAAEQSDEKQIKEILGRQVHGYGPQAEGKAANALLV
CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]