Click here to switch to the map view.

The map label for this gene is pal [H]

Identifier: 94311606

GI number: 94311606

Start: 2907974

End: 2908483

Strand: Reverse

Name: pal [H]

Synonym: Rmet_2674

Alternate gene names: 94311606

Gene position: 2908483-2907974 (Counterclockwise)

Preceding gene: 94311607

Following gene: 94311605

Centisome position: 74.04

GC content: 63.14

Gene sequence:

>510_bases
ATGTCCCAAATGATGACCAAATCGCTCGCCATTGCCGCTCTGCTGGCTCTGGGCGCCTGCAGCTCGGGTGTGAAGCTCGA
CGACGCATCGAAGTCCGGCGCCGGCACCGGCGCGACCACCGACGCACGCAATGTGGCGCCGGTCGATGTTTCGCGTGACC
CGCTGAACGACCCGAACGGCCCGCTGGCCAAGCGCAGCGTGTACTTCGATTTCGACAGCTACTCCGTGAAGCAGGACTAC
CAAGGCATGCTGCAAGCCCACTCGCAGTACCTGGGCAGCAACAAGAGCCGCAAGATCCTGATCCAGGGCAACACCGACGA
GCGTGGCACCAGCGAGTACAACCTGGCACTGGGCCAGAAGCGTGCCGAAGCCGTGCGCCGTTCGCTGGCTGCGATGGGTG
TGCCTGACTCGCAGATGGAAGCTGTGAGCCTGGGCAAGGAAAAGCCGAAGGCAACCGGTCACGATGATGCCTCGTGGGCC
GAGAACCGTCGCGCCGATATCGTTTACTGA

Upstream 100 bases:

>100_bases
ACGGACGGACGCACCAAGCAGGTTCTGTCTCTCCAGTCCGGCGCTGTTCGAGAGCCGTCCTGGGGGCCTTTCATGCAGTA
AAAAAGAGGAGTCTCTCGCC

Downstream 100 bases:

>100_bases
TCCACGGATAATTCTTCATGAATGCTCGCGTTTCCACGCTGCTATGGCTTGCCGCTGTATCCGGCGGTGGCCTGCTGGCA
GCCATTCCCGCGCACGCCGG

Product: peptidoglycan-associated outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSQMMTKSLAIAALLALGACSSGVKLDDASKSGAGTGATTDARNVAPVDVSRDPLNDPNGPLAKRSVYFDFDSYSVKQDY
QGMLQAHSQYLGSNKSRKILIQGNTDERGTSEYNLALGQKRAEAVRRSLAAMGVPDSQMEAVSLGKEKPKATGHDDASWA
ENRRADIVY

Sequences:

>Translated_169_residues
MSQMMTKSLAIAALLALGACSSGVKLDDASKSGAGTGATTDARNVAPVDVSRDPLNDPNGPLAKRSVYFDFDSYSVKQDY
QGMLQAHSQYLGSNKSRKILIQGNTDERGTSEYNLALGQKRAEAVRRSLAAMGVPDSQMEAVSLGKEKPKATGHDDASWA
ENRRADIVY
>Mature_168_residues
SQMMTKSLAIAALLALGACSSGVKLDDASKSGAGTGATTDARNVAPVDVSRDPLNDPNGPLAKRSVYFDFDSYSVKQDYQ
GMLQAHSQYLGSNKSRKILIQGNTDERGTSEYNLALGQKRAEAVRRSLAAMGVPDSQMEAVSLGKEKPKATGHDDASWAE
NRRADIVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=169, Percent_Identity=40.8284023668639, Blast_Score=121, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18072; Mature: 17941

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQMMTKSLAIAALLALGACSSGVKLDDASKSGAGTGATTDARNVAPVDVSRDPLNDPNG
CCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PLAKRSVYFDFDSYSVKQDYQGMLQAHSQYLGSNKSRKILIQGNTDERGTSEYNLALGQK
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHH
RAEAVRRSLAAMGVPDSQMEAVSLGKEKPKATGHDDASWAENRRADIVY
HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure 
SQMMTKSLAIAALLALGACSSGVKLDDASKSGAGTGATTDARNVAPVDVSRDPLNDPNG
CHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PLAKRSVYFDFDSYSVKQDYQGMLQAHSQYLGSNKSRKILIQGNTDERGTSEYNLALGQK
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHH
RAEAVRRSLAAMGVPDSQMEAVSLGKEKPKATGHDDASWAENRRADIVY
HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]