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The map label for this gene is paaJ [C]

Identifier: 94311465

GI number: 94311465

Start: 2750566

End: 2751759

Strand: Reverse

Name: paaJ [C]

Synonym: Rmet_2529

Alternate gene names: 94311465

Gene position: 2751759-2750566 (Counterclockwise)

Preceding gene: 94311466

Following gene: 94311464

Centisome position: 70.05

GC content: 64.66

Gene sequence:

>1194_bases
ATGTCCAAGCATGTGGTGGTAGCCGGGGTCGGCATGATCCCGTTCAAGAAACCGGGTCAGAGCGATTCCTACAGCGTCAT
GGGCGCCACGGCGACCAGGCTCGCGCTGGAGGATGCGGGCCTGCCATATGACAGGATCCAGCAGGCCTATGTCGGCTATG
TGTACGGTGACTCCACCTGCGGCCAGACCGCGCTGTACAAGGTCGGGGTGACCGGCATTCCCATTGTCAACGTCAATAAC
AACTGCTCCACGGGTTCCAGCGCTCTGTTCCTGGCTCGCCAGGCGGTGGAAAGCGGCGCGGTGGAATGCGCGCTGGCGCT
GGGCTTCGAGTTCATGCAGCCGGGCGCACTGACGAGCGTCTGGACCGACCGTGAGCGTGCAATGGCGCGCTTCACGGAAA
TCTCGGCGCCGATGGTGCAGGATGCGCTGGATGCCGGTGTGCCCAGTGCACTGACGATGTTCGGCGGCGCCGGTCGCGAG
CATATGCAAAGGTACGGCACGAAGCTGGAGACCTTCGCGAAGATCCGCGCCAAGGCGAGCCGCCATGCCGCCAACAACCC
GCTGGCCGTGTTCCGCACCGTGGTGACGGAGGAAGACGTGATGAACGAGAAGGTTATGTGGCCTGGCGTCATGACCCGCT
CGATGGCCTGCCCACCCACCAGCGGCGCCGCGGCCGCGATCGTCTGCACGGAAGCTTTCGCGAAGAAGCACAACCTCCGC
ACCGATGTGCGCATCCTGGCCCAGTCATTGACCACCGATGTGGCGCAGAGCTTCGATCCACCGTCGATGATCGGCCTGGT
CGGCTTCCATATGGCCGAGCGCGGCGCGAAGGCCGTGTACGAGGCGGCTGGAGTAAGCCCATCGGATATCCAGGTCTGCG
AATTGCACGACTGTTTCGCGCAGAACGAACTGCTGACCTACGAGTCGCTGGGCTTCGCGAAGATCGGCGAGGCCGAGAAG
ATGGTGCAAGACGGCGACAACACCTACGGCGGAAAGGTCGTGATCAACCCGTCGGGCGGTCTGCTGAGCAAGGGCCATCC
GCTGGGCGCCACCGGCCTGGCGCAGTGCTACGAACTGACCCGCCAGATCCGGGGCACGGCGGAGGCGACGCAGGTGGAGC
GCGTGCAGCTTGCATTGCAGCACAACCTTGGCCTCGGCGGCGCCTGCGTGGTGACGCTGTACGGCCGCGCATAA

Upstream 100 bases:

>100_bases
ATGCGCGTGGCGCGCGTCTACGGCGGGTCCAATGAAGTGATGCGCGACATCATCACGCGCAAGATGTAACTACAACGATT
TCAGCGAGGAGACAACAGCG

Downstream 100 bases:

>100_bases
GGCCAGATCGGCGCGGGAGCGGGTATGGCCCGCGTCCGGCCATGACTATCGAGAGGAGAACATCAGATGGCTGACAAGAG
CATGATTGGGATGGACCTCG

Product: lipid-transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MSKHVVVAGVGMIPFKKPGQSDSYSVMGATATRLALEDAGLPYDRIQQAYVGYVYGDSTCGQTALYKVGVTGIPIVNVNN
NCSTGSSALFLARQAVESGAVECALALGFEFMQPGALTSVWTDRERAMARFTEISAPMVQDALDAGVPSALTMFGGAGRE
HMQRYGTKLETFAKIRAKASRHAANNPLAVFRTVVTEEDVMNEKVMWPGVMTRSMACPPTSGAAAAIVCTEAFAKKHNLR
TDVRILAQSLTTDVAQSFDPPSMIGLVGFHMAERGAKAVYEAAGVSPSDIQVCELHDCFAQNELLTYESLGFAKIGEAEK
MVQDGDNTYGGKVVINPSGGLLSKGHPLGATGLAQCYELTRQIRGTAEATQVERVQLALQHNLGLGGACVVTLYGRA

Sequences:

>Translated_397_residues
MSKHVVVAGVGMIPFKKPGQSDSYSVMGATATRLALEDAGLPYDRIQQAYVGYVYGDSTCGQTALYKVGVTGIPIVNVNN
NCSTGSSALFLARQAVESGAVECALALGFEFMQPGALTSVWTDRERAMARFTEISAPMVQDALDAGVPSALTMFGGAGRE
HMQRYGTKLETFAKIRAKASRHAANNPLAVFRTVVTEEDVMNEKVMWPGVMTRSMACPPTSGAAAAIVCTEAFAKKHNLR
TDVRILAQSLTTDVAQSFDPPSMIGLVGFHMAERGAKAVYEAAGVSPSDIQVCELHDCFAQNELLTYESLGFAKIGEAEK
MVQDGDNTYGGKVVINPSGGLLSKGHPLGATGLAQCYELTRQIRGTAEATQVERVQLALQHNLGLGGACVVTLYGRA
>Mature_396_residues
SKHVVVAGVGMIPFKKPGQSDSYSVMGATATRLALEDAGLPYDRIQQAYVGYVYGDSTCGQTALYKVGVTGIPIVNVNNN
CSTGSSALFLARQAVESGAVECALALGFEFMQPGALTSVWTDRERAMARFTEISAPMVQDALDAGVPSALTMFGGAGREH
MQRYGTKLETFAKIRAKASRHAANNPLAVFRTVVTEEDVMNEKVMWPGVMTRSMACPPTSGAAAAIVCTEAFAKKHNLRT
DVRILAQSLTTDVAQSFDPPSMIGLVGFHMAERGAKAVYEAAGVSPSDIQVCELHDCFAQNELLTYESLGFAKIGEAEKM
VQDGDNTYGGKVVINPSGGLLSKGHPLGATGLAQCYELTRQIRGTAEATQVERVQLALQHNLGLGGACVVTLYGRA

Specific function: Thiolytic Cleavage Of Beta-Ketoadipyl-CoA To Succinate And Acetyl-CoA (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI19923233, Length=396, Percent_Identity=51.5151515151515, Blast_Score=383, Evalue=1e-106,
Organism=Homo sapiens, GI302344760, Length=394, Percent_Identity=48.7309644670051, Blast_Score=347, Evalue=2e-95,
Organism=Homo sapiens, GI302344767, Length=326, Percent_Identity=51.840490797546, Blast_Score=323, Evalue=2e-88,
Organism=Homo sapiens, GI302344762, Length=395, Percent_Identity=44.0506329113924, Blast_Score=297, Evalue=1e-80,
Organism=Homo sapiens, GI55956775, Length=357, Percent_Identity=41.4565826330532, Blast_Score=248, Evalue=1e-65,
Organism=Caenorhabditis elegans, GI17537653, Length=396, Percent_Identity=44.9494949494949, Blast_Score=311, Evalue=3e-85,
Organism=Drosophila melanogaster, GI24585051, Length=398, Percent_Identity=52.0100502512563, Blast_Score=402, Evalue=1e-112,
Organism=Drosophila melanogaster, GI19921506, Length=394, Percent_Identity=52.0304568527919, Blast_Score=398, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002155
- InterPro:   IPR016039
- InterPro:   IPR016038
- InterPro:   IPR020617
- InterPro:   IPR020616 [H]

Pfam domain/function: PF02803 Thiolase_C; PF00108 Thiolase_N [H]

EC number: 2.3.1.- [C]

Molecular weight: Translated: 42130; Mature: 41998

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS00098 THIOLASE_1 ; PS00737 THIOLASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKHVVVAGVGMIPFKKPGQSDSYSVMGATATRLALEDAGLPYDRIQQAYVGYVYGDSTC
CCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHEEEEEECCCC
GQTALYKVGVTGIPIVNVNNNCSTGSSALFLARQAVESGAVECALALGFEFMQPGALTSV
CCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCHHHCCCCCCHHH
WTDRERAMARFTEISAPMVQDALDAGVPSALTMFGGAGREHMQRYGTKLETFAKIRAKAS
HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHH
RHAANNPLAVFRTVVTEEDVMNEKVMWPGVMTRSMACPPTSGAAAAIVCTEAFAKKHNLR
HHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEEEHHHHHHHHHCCCH
TDVRILAQSLTTDVAQSFDPPSMIGLVGFHMAERGAKAVYEAAGVSPSDIQVCELHDCFA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHH
QNELLTYESLGFAKIGEAEKMVQDGDNTYGGKVVINPSGGLLSKGHPLGATGLAQCYELT
CCCEEEHHCCCCHHCCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
RQIRGTAEATQVERVQLALQHNLGLGGACVVTLYGRA
HHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
>Mature Secondary Structure 
SKHVVVAGVGMIPFKKPGQSDSYSVMGATATRLALEDAGLPYDRIQQAYVGYVYGDSTC
CCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHEEEEEECCCC
GQTALYKVGVTGIPIVNVNNNCSTGSSALFLARQAVESGAVECALALGFEFMQPGALTSV
CCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCHHHCCCCCCHHH
WTDRERAMARFTEISAPMVQDALDAGVPSALTMFGGAGREHMQRYGTKLETFAKIRAKAS
HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHH
RHAANNPLAVFRTVVTEEDVMNEKVMWPGVMTRSMACPPTSGAAAAIVCTEAFAKKHNLR
HHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEEEHHHHHHHHHCCCH
TDVRILAQSLTTDVAQSFDPPSMIGLVGFHMAERGAKAVYEAAGVSPSDIQVCELHDCFA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHH
QNELLTYESLGFAKIGEAEKMVQDGDNTYGGKVVINPSGGLLSKGHPLGATGLAQCYELT
CCCEEEHHCCCCHHCCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
RQIRGTAEATQVERVQLALQHNLGLGGACVVTLYGRA
HHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]