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The map label for this gene is cycL [H]

Identifier: 94311328

GI number: 94311328

Start: 2602760

End: 2603215

Strand: Direct

Name: cycL [H]

Synonym: Rmet_2392

Alternate gene names: 94311328

Gene position: 2602760-2603215 (Clockwise)

Preceding gene: 94311327

Following gene: 94311329

Centisome position: 66.26

GC content: 57.46

Gene sequence:

>456_bases
ATGATTCTCTGGCGGGTGGCATTGTTTTTCTTTCTGTTCACGGCTCCGGTCTGGGCCAGCGACCAAGCGGCCGAGGACCG
AATGCTGGGCATTGCATCCGAGTTACGTTGCCTGGTTTGCCAGAATGAATCGATTGCAGCTTCGCAGGCCGATCTTGCCG
CTGACTTGCGCCAACAGATCCGCGAGCAGATCCGTGCCGGCAAGAGCGATGACGACATCCGGACTTATATGGTCGAGCGA
TACGGCGATTTCGTGCTCTATCGCCCGCCCTTGAAGCCGACAACGATGTTGCTTTGGTTTGGCCCGTTCGTGGTGCTTGC
CTTGGGCATTGTGGTCTTGGTCATGAATCTGCGCAGCCGAAACCGCAAGCCGAAGCATGCTGCACTCAATGAAGAGGAGC
GCAGACACGCGGACGCGCTGCTGGCTCCGCCACACAATGTACTGGACGAAACATGA

Upstream 100 bases:

>100_bases
TGATCGATAAGGCAGGCATCATTCGCTACAAGCACACCGGGGCGATTGACGCGGGGGAAATGCGCGGCGAGCTGCTGCCG
CTGGTGCGGGAGCTTGAGAA

Downstream 100 bases:

>100_bases
GCATCGTTTTCCTGACTCTGGCGTCGGTGCTCGTGGGAGGCGTCTCGATATGGCTTTCTTTCGTTCTCTGGCGAGGGGGA
CATGGTGCGAGCGACCAAGT

Product: cytochrome c-type biogenesis protein cycL

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MILWRVALFFFLFTAPVWASDQAAEDRMLGIASELRCLVCQNESIAASQADLAADLRQQIREQIRAGKSDDDIRTYMVER
YGDFVLYRPPLKPTTMLLWFGPFVVLALGIVVLVMNLRSRNRKPKHAALNEEERRHADALLAPPHNVLDET

Sequences:

>Translated_151_residues
MILWRVALFFFLFTAPVWASDQAAEDRMLGIASELRCLVCQNESIAASQADLAADLRQQIREQIRAGKSDDDIRTYMVER
YGDFVLYRPPLKPTTMLLWFGPFVVLALGIVVLVMNLRSRNRKPKHAALNEEERRHADALLAPPHNVLDET
>Mature_151_residues
MILWRVALFFFLFTAPVWASDQAAEDRMLGIASELRCLVCQNESIAASQADLAADLRQQIREQIRAGKSDDDIRTYMVER
YGDFVLYRPPLKPTTMLLWFGPFVVLALGIVVLVMNLRSRNRKPKHAALNEEERRHADALLAPPHNVLDET

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=89, Percent_Identity=49.438202247191, Blast_Score=94, Evalue=3e-21,
Organism=Escherichia coli, GI1790512, Length=67, Percent_Identity=46.2686567164179, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17237; Mature: 17237

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILWRVALFFFLFTAPVWASDQAAEDRMLGIASELRCLVCQNESIAASQADLAADLRQQI
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
REQIRAGKSDDDIRTYMVERYGDFVLYRPPLKPTTMLLWFGPFVVLALGIVVLVMNLRSR
HHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
NRKPKHAALNEEERRHADALLAPPHNVLDET
CCCCCCCCCCHHHHHHHCCCCCCCHHHCCCC
>Mature Secondary Structure
MILWRVALFFFLFTAPVWASDQAAEDRMLGIASELRCLVCQNESIAASQADLAADLRQQI
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
REQIRAGKSDDDIRTYMVERYGDFVLYRPPLKPTTMLLWFGPFVVLALGIVVLVMNLRSR
HHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
NRKPKHAALNEEERRHADALLAPPHNVLDET
CCCCCCCCCCHHHHHHHCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]