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The map label for this gene is cycH [H]

Identifier: 94311329

GI number: 94311329

Start: 2603212

End: 2604093

Strand: Direct

Name: cycH [H]

Synonym: Rmet_2393

Alternate gene names: 94311329

Gene position: 2603212-2604093 (Clockwise)

Preceding gene: 94311328

Following gene: 94311330

Centisome position: 66.27

GC content: 61.79

Gene sequence:

>882_bases
ATGAGCATCGTTTTCCTGACTCTGGCGTCGGTGCTCGTGGGAGGCGTCTCGATATGGCTTTCTTTCGTTCTCTGGCGAGG
GGGACATGGTGCGAGCGACCAAGTTGCCCCTGAAAGCGTGAACGTCGCGGTACTGCGCGATCAATGGGCGGAGTTGGAGA
GAGACCACATCAATGGCACGTTGTCGGCCAATGAATTGGCCGATGCAAGATCTGATCTTCAGCGGCGAGCGCTGAATGAA
ACTGCTGCTCCTCCGTTGAAATTGGGGCCGCCTGCTGGAAGCAAGCGGGCAGCGATCACTGTCGCCATTCTGCTGCCGAT
CGCGACAGCGCTCACCTATTCGTACCTGGGAAATCCGGCCGCCACGGACCCGTCACAGGTTCGCAGCGCGAGCATGACGA
CGCAAACCGATGTGCAAGCAATGGTGGCCTCTCTTCAGGCACGGCTGGCCCAGCACCCCGATGATCCTGGAGGCTGGCTC
ATGCTGGCGCGTTCCTACCGTTACTTCGGCGATCATGAGCAAGCCGTCAATGCCTTCACCCACGCCAATGAGCTGGTCCA
GAACGATCCACAGGCGTTGGCGGAGTACGCGGAGTCGCTGTCCAGAATCCGTGGCTCCGGTTTTGAGGGAGAGCCCACTC
GTCTGCTTGAGCGCGCCTTGTCGCTCGATCCCAATGCAGCCCTGCCTCTGACTCTGGCCGGCGCTGCTGCGGTGCAGCGC
CGGGACTATCAAACGGCCATCGCGCACTGGGAGAAGCTGCTCGGGATGATGCCCCCCGATTCCGAGGCGGCGAAAGTCGT
CGCGGCCGGGATTGAACGGGCCCGGACGGAGCAGGCGGAACTCGCCCATGGTCGATCACCAGAGCCAAGCGCAAAGCCTT
GA

Upstream 100 bases:

>100_bases
GCAGCCGAAACCGCAAGCCGAAGCATGCTGCACTCAATGAAGAGGAGCGCAGACACGCGGACGCGCTGCTGGCTCCGCCA
CACAATGTACTGGACGAAAC

Downstream 100 bases:

>100_bases
TGGCATCCCCGTCCCCCACGGGCCATTGGGGGGACCTTTAGTTTCGCTTAATCGGGTCATCGCATGATCCAGGCAGCTTT
GCTTGGAGGACTCGGATTTG

Product: putative cytochrome c-type biogenesis protein CycH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSIVFLTLASVLVGGVSIWLSFVLWRGGHGASDQVAPESVNVAVLRDQWAELERDHINGTLSANELADARSDLQRRALNE
TAAPPLKLGPPAGSKRAAITVAILLPIATALTYSYLGNPAATDPSQVRSASMTTQTDVQAMVASLQARLAQHPDDPGGWL
MLARSYRYFGDHEQAVNAFTHANELVQNDPQALAEYAESLSRIRGSGFEGEPTRLLERALSLDPNAALPLTLAGAAAVQR
RDYQTAIAHWEKLLGMMPPDSEAAKVVAAGIERARTEQAELAHGRSPEPSAKP

Sequences:

>Translated_293_residues
MSIVFLTLASVLVGGVSIWLSFVLWRGGHGASDQVAPESVNVAVLRDQWAELERDHINGTLSANELADARSDLQRRALNE
TAAPPLKLGPPAGSKRAAITVAILLPIATALTYSYLGNPAATDPSQVRSASMTTQTDVQAMVASLQARLAQHPDDPGGWL
MLARSYRYFGDHEQAVNAFTHANELVQNDPQALAEYAESLSRIRGSGFEGEPTRLLERALSLDPNAALPLTLAGAAAVQR
RDYQTAIAHWEKLLGMMPPDSEAAKVVAAGIERARTEQAELAHGRSPEPSAKP
>Mature_292_residues
SIVFLTLASVLVGGVSIWLSFVLWRGGHGASDQVAPESVNVAVLRDQWAELERDHINGTLSANELADARSDLQRRALNET
AAPPLKLGPPAGSKRAAITVAILLPIATALTYSYLGNPAATDPSQVRSASMTTQTDVQAMVASLQARLAQHPDDPGGWLM
LARSYRYFGDHEQAVNAFTHANELVQNDPQALAEYAESLSRIRGSGFEGEPTRLLERALSLDPNAALPLTLAGAAAVQRR
DYQTAIAHWEKLLGMMPPDSEAAKVVAAGIERARTEQAELAHGRSPEPSAKP

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31356; Mature: 31224

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIVFLTLASVLVGGVSIWLSFVLWRGGHGASDQVAPESVNVAVLRDQWAELERDHINGT
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
LSANELADARSDLQRRALNETAAPPLKLGPPAGSKRAAITVAILLPIATALTYSYLGNPA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
ATDPSQVRSASMTTQTDVQAMVASLQARLAQHPDDPGGWLMLARSYRYFGDHEQAVNAFT
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
HANELVQNDPQALAEYAESLSRIRGSGFEGEPTRLLERALSLDPNAALPLTLAGAAAVQR
HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEHHHHHHHH
RDYQTAIAHWEKLLGMMPPDSEAAKVVAAGIERARTEQAELAHGRSPEPSAKP
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SIVFLTLASVLVGGVSIWLSFVLWRGGHGASDQVAPESVNVAVLRDQWAELERDHINGT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
LSANELADARSDLQRRALNETAAPPLKLGPPAGSKRAAITVAILLPIATALTYSYLGNPA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
ATDPSQVRSASMTTQTDVQAMVASLQARLAQHPDDPGGWLMLARSYRYFGDHEQAVNAFT
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
HANELVQNDPQALAEYAESLSRIRGSGFEGEPTRLLERALSLDPNAALPLTLAGAAAVQR
HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEHHHHHHHH
RDYQTAIAHWEKLLGMMPPDSEAAKVVAAGIERARTEQAELAHGRSPEPSAKP
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]