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The map label for this gene is ygaV [H]

Identifier: 94311306

GI number: 94311306

Start: 2582007

End: 2582318

Strand: Direct

Name: ygaV [H]

Synonym: Rmet_2370

Alternate gene names: 94311306

Gene position: 2582007-2582318 (Clockwise)

Preceding gene: 94311302

Following gene: 94311307

Centisome position: 65.73

GC content: 61.86

Gene sequence:

>312_bases
ATGATGGTTGACAAGAAAGACCAGTCGTTTCTACAGGACGGCGCGGCCAAGGCTGCGGCCATGCTGCGGACGGTCGGCAA
TGAGCATCGCCTGCTCGTTCTCTGCCTGCTGATCGAGCATGGCGAGATGACCGTCGGTGCCCTGCACGAAAACGTGGCGC
TGAGCCAGTCCGCCTTGTCCCAGCACCTGGCCAAGATGCGCGAGGAAGGCCTGGTGACCTATCGGCGAGAGTCGCAGACC
CTGCACTACCGTATCGACAACCCCGACGTGGCCAAGCTCATCGCCACGCTCAAGGCCATCTTCTGTCCCTGA

Upstream 100 bases:

>100_bases
ACACCGGCAGGAAGACCTGCCGCACTTCCTGCCTTCGAGGAAGTGCCTTGATATTTTATTAGCTTATGCTAAATTAGATA
CATGTTAAATACAAGCTGCC

Downstream 100 bases:

>100_bases
TCCACCCTCGGAGGCCATTGCCATGTCCCTGAAATCCATCTCGCCCCAAGCTGCCAGCGAACTCATGAACCAGGGTGCCG
TTCTGGTGGACATCCGTGCG

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MMVDKKDQSFLQDGAAKAAAMLRTVGNEHRLLVLCLLIEHGEMTVGALHENVALSQSALSQHLAKMREEGLVTYRRESQT
LHYRIDNPDVAKLIATLKAIFCP

Sequences:

>Translated_103_residues
MMVDKKDQSFLQDGAAKAAAMLRTVGNEHRLLVLCLLIEHGEMTVGALHENVALSQSALSQHLAKMREEGLVTYRRESQT
LHYRIDNPDVAKLIATLKAIFCP
>Mature_103_residues
MMVDKKDQSFLQDGAAKAAAMLRTVGNEHRLLVLCLLIEHGEMTVGALHENVALSQSALSQHLAKMREEGLVTYRRESQT
LHYRIDNPDVAKLIATLKAIFCP

Specific function: Functions as transcription repressor (Probable) [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789021, Length=93, Percent_Identity=45.1612903225806, Blast_Score=83, Evalue=3e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 11473; Mature: 11473

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVDKKDQSFLQDGAAKAAAMLRTVGNEHRLLVLCLLIEHGEMTVGALHENVALSQSALS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHH
QHLAKMREEGLVTYRRESQTLHYRIDNPDVAKLIATLKAIFCP
HHHHHHHHCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMVDKKDQSFLQDGAAKAAAMLRTVGNEHRLLVLCLLIEHGEMTVGALHENVALSQSALS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHH
QHLAKMREEGLVTYRRESQTLHYRIDNPDVAKLIATLKAIFCP
HHHHHHHHCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]